Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4c16
(581 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z74472-2|CAA98945.1| 188|Caenorhabditis elegans Hypothetical pr... 103 7e-23
Z81522-3|CAB04234.2| 167|Caenorhabditis elegans Hypothetical pr... 37 0.012
U39999-3|AAR85904.2| 114|Caenorhabditis elegans Insulin related... 33 0.15
AC026301-5|AAK68894.1| 745|Caenorhabditis elegans Hypothetical ... 31 0.79
Z74028-2|CAA98428.1| 1058|Caenorhabditis elegans Hypothetical pr... 29 2.4
U28731-5|AAA68299.1| 125|Caenorhabditis elegans Hypothetical pr... 29 2.4
AC006608-10|AAF39754.1| 801|Caenorhabditis elegans Hypothetical... 29 2.4
U80444-4|AAB37790.1| 531|Caenorhabditis elegans Importin alpha ... 27 9.7
U53336-7|AAA96179.1| 642|Caenorhabditis elegans Hypothetical pr... 27 9.7
AL023830-1|CAA19472.1| 449|Caenorhabditis elegans Hypothetical ... 27 9.7
AF326936-1|AAG49386.1| 531|Caenorhabditis elegans importin beta... 27 9.7
AF077541-9|AAC64633.1| 909|Caenorhabditis elegans Cysteinyl trn... 27 9.7
AF077541-8|AAK68426.1| 908|Caenorhabditis elegans Cysteinyl trn... 27 9.7
AF040996-1|AAB97172.1| 531|Caenorhabditis elegans importin alph... 27 9.7
>Z74472-2|CAA98945.1| 188|Caenorhabditis elegans Hypothetical
protein F23H12.2 protein.
Length = 188
Score = 103 bits (248), Expect = 7e-23
Identities = 54/157 (34%), Positives = 84/157 (53%), Gaps = 5/157 (3%)
Frame = +1
Query: 115 MMEITRTTLGIAVGIAGTLFLGYCVYFDQQRRKDPLFKKKLRERR---LNAQQNASRSRT 285
++ ++ + +A GIAG FLGYC+YFD +R P +K K+R++R A A R
Sbjct: 5 ILGFNKSNVVLAAGIAGAAFLGYCIYFDHKRINAPDYKDKIRQKRRAQAGAGGMAPRRPA 64
Query: 286 LGG--PVPDMNDHEAMQRFFLQQIQXXXXXXXXXXXXXXVEHLGQAVAVCGQTEQLLSVL 459
G PD+ D MQRFFLQ++Q H+ AV +CG+++QLLS+
Sbjct: 65 AAGNDAAPDVTDPSQMQRFFLQEVQLGEELMAAGNVDEGAVHIANAVMLCGESQQLLSIF 124
Query: 460 QQTMPAPIFHLLLKKLPEVSERLRSSMKARSNVMQEE 570
QQT+ F ++++LP ERL A+++ + E
Sbjct: 125 QQTLSEDQFRAVVQQLPSTRERLAEMFGAKADEAENE 161
>Z81522-3|CAB04234.2| 167|Caenorhabditis elegans Hypothetical
protein F32B4.2 protein.
Length = 167
Score = 36.7 bits (81), Expect = 0.012
Identities = 30/142 (21%), Positives = 55/142 (38%), Gaps = 8/142 (5%)
Frame = +1
Query: 142 GIAVGIAGTLFLGYCVYFDQQRRKDPLFKKKLRERRLNAQQNASRSRTLGGP-------V 300
G+ VG A L + Y+ Q+++ E ++S R GG +
Sbjct: 13 GVVVGGAALLAIAAYYYWSQKKKSSDTSSATSSESNDVVMMSSSEPRADGGADSKAKFNI 72
Query: 301 PDMNDHEAMQRFFLQQIQXXXXXXXXXXXXXX-VEHLGQAVAVCGQTEQLLSVLQQTMPA 477
D N ++ F++Q+ H+ A+ + G+T QLL VL+ ++
Sbjct: 73 EDENVRRVCEKLFMEQMDLGEAYLEDEETEELGAIHMANAIVLTGETAQLLKVLRGSISP 132
Query: 478 PIFHLLLKKLPEVSERLRSSMK 543
F + K LP R+ ++
Sbjct: 133 AHFANIQKYLPSADLRVHQLLQ 154
>U39999-3|AAR85904.2| 114|Caenorhabditis elegans Insulin related
protein 15 protein.
Length = 114
Score = 33.1 bits (72), Expect = 0.15
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +3
Query: 114 NDGNHKNNVRYSCRNCGNTVLGLLCIL*PAKAQGSAVQKEVERAKTECTTKCFEVSYPRW 293
ND ++N +S R+CG ++ + L G A+Q E+ RA C+T C + W
Sbjct: 23 NDFQPRDNKHHSYRSCGESLSRRVAFL----CNGGAIQTEILRALDCCSTGCTDKQIFSW 78
>AC026301-5|AAK68894.1| 745|Caenorhabditis elegans Hypothetical
protein Y54F10BM.3 protein.
Length = 745
Score = 30.7 bits (66), Expect = 0.79
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +1
Query: 172 FLGYCVYFDQQRRKDPLFKKKLRERRLN--AQQNASRSRTLGGPVPDMNDHEA 324
F YC + QQ R + + ++K ERRL ++ +AS++R GG P E+
Sbjct: 205 FGAYCYWKVQQWRDEKMAREKAWERRLARVSEVSASKNRNAGGVDPAKRPRES 257
>Z74028-2|CAA98428.1| 1058|Caenorhabditis elegans Hypothetical
protein C14C10.4 protein.
Length = 1058
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +3
Query: 483 LPSAS*ETARSFRTPPILDEGEEQRNAGRR 572
L SA+ +T ++ TPP L + +EQ N GR+
Sbjct: 18 LSSAAAQTTKNTATPPPLKQQQEQSNDGRK 47
>U28731-5|AAA68299.1| 125|Caenorhabditis elegans Hypothetical
protein F12A10.6 protein.
Length = 125
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Frame = -1
Query: 281 RDLEAFCCAFSLRSLNFFLNSGSLRLCWS----KYTQ*PKNSVPAI 156
RD E A + NSG+L +CW ++ P+NS+PAI
Sbjct: 51 RDKEKVRQAVEMVGAAKIFNSGNLPICWKFQFRQFADLPENSIPAI 96
>AC006608-10|AAF39754.1| 801|Caenorhabditis elegans Hypothetical
protein C15F1.2 protein.
Length = 801
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = -3
Query: 417 SLPEMFDSSFKITCSQQLFAELNLLQEKSLH 325
SL + ++SF+ + S++ F + NL+QEK H
Sbjct: 683 SLRRLLNTSFEYSKSRECFHDANLIQEKCTH 713
>U80444-4|AAB37790.1| 531|Caenorhabditis elegans Importin alpha
family protein 2 protein.
Length = 531
Score = 27.1 bits (57), Expect = 9.7
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +1
Query: 424 VCGQTEQLLSVLQQTMPAPIFHLLLKKLPEVSER 525
V G TEQ ++ ++ + P+ HL + + ++SE+
Sbjct: 160 VSGSTEQTIAAVEAGVTIPLIHLSVHQSAQISEQ 193
>U53336-7|AAA96179.1| 642|Caenorhabditis elegans Hypothetical
protein K07C11.9 protein.
Length = 642
Score = 27.1 bits (57), Expect = 9.7
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Frame = -3
Query: 477 SWHSLLKYTKQLFSLSTNSHSLPEMFD-------SSFKITCSQQLFAELNLLQEKSLHSF 319
S H L + KQLFS ++ +LP + D S FKI Q L E N + + +
Sbjct: 290 SIHELTEQEKQLFSSICSAENLPIVLDECLKSLTSPFKIRVEQLLSTEKNAITIFKMGNI 349
Query: 318 MIVH 307
+I +
Sbjct: 350 LIFY 353
>AL023830-1|CAA19472.1| 449|Caenorhabditis elegans Hypothetical
protein Y26E6A.1 protein.
Length = 449
Score = 27.1 bits (57), Expect = 9.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 205 RRKDPLFKKKLRERRLNAQQNASRSRTLGGP 297
RR +F++ RRL A + A +R GGP
Sbjct: 37 RRHREMFERARANRRLQADRGAQAARERGGP 67
>AF326936-1|AAG49386.1| 531|Caenorhabditis elegans importin beta
binding domain proteinprotein.
Length = 531
Score = 27.1 bits (57), Expect = 9.7
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +1
Query: 424 VCGQTEQLLSVLQQTMPAPIFHLLLKKLPEVSER 525
V G TEQ ++ ++ + P+ HL + + ++SE+
Sbjct: 160 VSGSTEQTIAAVEAGVTIPLIHLSVHQSAQISEQ 193
>AF077541-9|AAC64633.1| 909|Caenorhabditis elegans Cysteinyl trna
synthetase protein1, isoform a protein.
Length = 909
Score = 27.1 bits (57), Expect = 9.7
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +1
Query: 481 IFHLLLKKLPEVSERLRSSMKARSNVMQEE 570
+F +++KK+ + S L +MKA+ ++ EE
Sbjct: 308 MFEVMIKKVQQQSSALEEAMKAQDSIATEE 337
>AF077541-8|AAK68426.1| 908|Caenorhabditis elegans Cysteinyl trna
synthetase protein1, isoform b protein.
Length = 908
Score = 27.1 bits (57), Expect = 9.7
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +1
Query: 481 IFHLLLKKLPEVSERLRSSMKARSNVMQEE 570
+F +++KK+ + S L +MKA+ ++ EE
Sbjct: 307 MFEVMIKKVQQQSSALEEAMKAQDSIATEE 336
>AF040996-1|AAB97172.1| 531|Caenorhabditis elegans importin alpha 2
protein.
Length = 531
Score = 27.1 bits (57), Expect = 9.7
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +1
Query: 424 VCGQTEQLLSVLQQTMPAPIFHLLLKKLPEVSER 525
V G TEQ ++ ++ + P+ HL + + ++SE+
Sbjct: 160 VSGSTEQTIAAVEAGVTIPLIHLSVHQSAQISEQ 193
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,252,343
Number of Sequences: 27780
Number of extensions: 262466
Number of successful extensions: 881
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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