Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4c13
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC167.04 |pam17||presequence translocase-associated motor subu...    28   1.6  
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar...    26   4.8  
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    26   6.4  
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   8.5  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    25   8.5  
SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2 |Schizosa...    25   8.5  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    25   8.5  

>SPAC167.04 |pam17||presequence translocase-associated motor subunit
           Pam17 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = -3

Query: 722 IFH*LWKLCYNTVS*ST*SKNEGYLADLPAATFSK*RSA 606
           IF  LWK CYN  + ST S  +    DL   TF K R +
Sbjct: 19  IFLTLWKTCYNVKTYSTESIKQKKPQDLNWPTFLKLRKS 57


>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 227 ERKERSRQEFDYQNKIRS*SAVHHQGR 307
           E++   RQ FD  N +R  + VH Q R
Sbjct: 102 EKRALDRQNFDQYNDLRRAAEVHRQAR 128


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 625 SANNGVHCLIDNGSWSLQA 569
           + +N +  +IDNGSW L+A
Sbjct: 20  NVSNDIPLVIDNGSWQLRA 38


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -1

Query: 301 LMMNCTLGPNFILIIK-FLSAPLFSF 227
           L++  TLGP F L  K FLS+P++ +
Sbjct: 571 LLVQDTLGPRFFLPKKFFLSSPVYDY 596


>SPCC550.03c |||RNA helicase involved in mRNA
            catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
 Frame = +3

Query: 84   NGLQNKISVCTIIKIAA*DRTRDQLAVMEQMYLIEIFIDKVTVFASDENEKSGADKNLII 263
            N LQNK+S   II            A+  Q Y +E  ID ++ + SD+N +   D    I
Sbjct: 968  NFLQNKLSGNPIISTP---NFLTHFALAYQEYELESNIDNLSSYISDQNLELLPDYEQRI 1024

Query: 264  KI--KFG--PKVQFIIKEGQLAVNEKTTDDIV 347
            K+  + G     + ++ +G++A    +T ++V
Sbjct: 1025 KVLQELGYIDAERTVLLKGRVACEINSTSELV 1056


>SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 101 NFSVYNNQNCCVGPDQGPIGSHG 169
           N+  YN Q    GP  GP  +HG
Sbjct: 363 NYKGYNCQQILTGPQLGPGDAHG 385


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 250 LSAPLFSFSSDAKTVTLS 197
           L +PLF+FS+DA T T +
Sbjct: 836 LKSPLFNFSADAPTFTFN 853


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,228,119
Number of Sequences: 5004
Number of extensions: 70857
Number of successful extensions: 175
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)