Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4c13
         (736 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0034 + 16679624-16679940,16679980-16680199,16680319-166806...    31   0.72 
04_01_0059 - 605084-606679                                             30   2.2  
03_02_0872 - 11983151-11983432,11983488-11983598,11983744-119840...    30   2.2  
02_05_0685 + 30891289-30891810,30892740-30892915,30893379-308934...    29   3.8  
09_06_0224 + 21661317-21661386,21663735-21663865,21663904-216639...    28   6.7  

>03_04_0034 +
           16679624-16679940,16679980-16680199,16680319-16680624,
           16680703-16681044,16681066-16681257,16681533-16681684,
           16681803-16681974,16682017-16682338,16682414-16682862
          Length = 823

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 13/60 (21%), Positives = 28/60 (46%)
 Frame = -1

Query: 724 GSFINCGNSVIILSPKALSRRMKDISPTCLQQHSANNGVHCLIDNGSWSLQASAVSLSIW 545
           G+ +  G + +   P + +   +++S    +   AN+G+    D  +WS + +    SIW
Sbjct: 140 GAAVGGGGAAVSARPASRASVRRNVSDLAAEHSDANDGIPVRKDKANWSARNTRTFCSIW 199


>04_01_0059 - 605084-606679
          Length = 531

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 694 IILSPKALSRRMKDISPTCLQQHSANNGVHCLI 596
           + LS  AL R +K +SP   + H + + +HCL+
Sbjct: 4   LTLSSTALLRLIKSLSPAVRRAHLSASSIHCLL 36


>03_02_0872 -
           11983151-11983432,11983488-11983598,11983744-11984007,
           11984038-11984163,11984257-11984481,11984757-11985311,
           11985390-11985695,11985815-11986369
          Length = 807

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/61 (21%), Positives = 27/61 (44%)
 Frame = -1

Query: 727 SGSFINCGNSVIILSPKALSRRMKDISPTCLQQHSANNGVHCLIDNGSWSLQASAVSLSI 548
           +G+ +  G   +   P + +    ++S    +   AN+G+    D  +WS + +    SI
Sbjct: 145 AGAVVGGGGVAVSARPASRASVCHNVSDLAAEHSDANDGIPVRKDKANWSARNTRTFCSI 204

Query: 547 W 545
           W
Sbjct: 205 W 205


>02_05_0685 +
           30891289-30891810,30892740-30892915,30893379-30893492,
           30893846-30893954,30894038-30894124,30895137-30895736,
           30895823-30896101,30896808-30896897,30897151-30897507,
           30897924-30898160,30898733-30898953,30899856-30899955,
           30900042-30900188,30900287-30900385
          Length = 1045

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 239 ALFVLVRRKNCHFVNEYLYQVHLLHDCQ 156
           A++ +  R+ C    EYL    LLHDC+
Sbjct: 355 AIWFIFSRRGCDAAVEYLEDCRLLHDCE 382


>09_06_0224 +
           21661317-21661386,21663735-21663865,21663904-21663983,
           21664248-21664372,21664745-21664830,21664932-21665168,
           21665261-21665380,21665502-21665602,21665655-21665758,
           21665851-21666047
          Length = 416

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 9/60 (15%)
 Frame = -1

Query: 304 SLMMNCTLGPNFILIIKFLSAPLFSFSSDAKTVTLS---------MNISIRYICSMTANW 152
           SL  +C++  N ++   F   P   F+S AKTVTLS         +NI I +I   T  W
Sbjct: 56  SLAHHCSMQINLVVFTVF--TPSLMFASLAKTVTLSDVISWWFMPVNIGITFIVGGTLGW 113


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,030,292
Number of Sequences: 37544
Number of extensions: 425884
Number of successful extensions: 1023
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)