Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4c08
         (432 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy...    28   0.70 
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    27   0.93 
SPBC1734.09 |||NST UDP-N-acetylglucosamine transporter|Schizosac...    25   5.0  
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p...    25   5.0  
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    25   6.6  
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom...    25   6.6  
SPAC24C9.09 |||mitochondrial threonine-tRNA ligase|Schizosacchar...    24   8.7  
SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces pombe...    24   8.7  
SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae Q0...    24   8.7  

>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 478

 Score = 27.9 bits (59), Expect = 0.70
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 216 ELDERALDALKEFPSDGALSVLGQFLDS-NLEHVSNKS 326
           EL+E  LDAL++   D A SVL +   S N E +   S
Sbjct: 259 ELNEEQLDALRKKDKDTAASVLAELFGSENTEEIDTVS 296


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 27.5 bits (58), Expect = 0.93
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 221 GRACSRCLKRISIRRC 268
           GR CS CLKR +I+ C
Sbjct: 36  GRPCSNCLKRSTIQSC 51


>SPBC1734.09 |||NST UDP-N-acetylglucosamine
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 316

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +3

Query: 231 ALDAL-KEFPSDGALSVLGQFLDSNLE 308
           AL+AL +EFPS G L    QF+   +E
Sbjct: 19  ALEALVREFPSSGILITFSQFILITIE 45


>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 66  NGEISYDEVAGKDSDVGRTEDYHKLIEY 149
           NGE S + V  + S++G+TE    L++Y
Sbjct: 285 NGEGSNESVIMRLSEIGKTETASPLLQY 312


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +3

Query: 231 ALDALKEFPSDGALSVLGQFLDSNLEHVSNKSAFL 335
           A+D +KEF +D    +  + L  +L+ +S  S+F+
Sbjct: 831 AIDKIKEFFADKDTKLYERALQQSLDTISANSSFI 865


>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 14/70 (20%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
 Frame = +3

Query: 141 IEYGLDPKVAAKLDX-IYKTGKLAHAELDERALDALKEFPSDGALSVLGQFLDSNLEHVS 317
           + Y L+P     ++  +++    AH   D  +    +   +D  +S +GQ +  N+ H  
Sbjct: 108 LAYQLEPTPLPTVEGKVFEALLRAHLITDPSSCSFSRCGRTDKGVSAMGQVISLNVRHSE 167

Query: 318 NKSAFLCGVM 347
            +    C V+
Sbjct: 168 RRPIIYCDVL 177


>SPAC24C9.09 |||mitochondrial threonine-tRNA
           ligase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 473

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
 Frame = +3

Query: 78  SYDEVAGKDSDVGRTEDYHKLIEYGLDPKVAAKLDXIYKTGKLAHAELDERALD--ALKE 251
           +Y++   +  +    ED H    YGL P        +Y + + ++ EL  R  D   L  
Sbjct: 116 NYEKEIFRVEESRNVEDEHSNATYGLKPMNCPGHCIVYASTERSYKELPLRFADFSPLHR 175

Query: 252 FPSDGALSVL 281
             + GALS L
Sbjct: 176 NEASGALSGL 185


>SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 405

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +3

Query: 189 YKTGKLAHAELDERA--LDALKEFPSDGALSVLGQFLDSN 302
           Y+TG LA  ELDE     D L+ +  D  L+VL   ++++
Sbjct: 311 YETGLLAGEELDENLPYNDYLQYYGPDYKLNVLSNNMENH 350


>SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae
           Q0130|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 74

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 138 VCGNLLSGQHQNPSQLPH 85
           +  NL+SG  +NPS  PH
Sbjct: 27  IFSNLISGTSRNPSVRPH 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,728,624
Number of Sequences: 5004
Number of extensions: 32905
Number of successful extensions: 102
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)