Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4c08
         (432 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0871 + 23865343-23866016,23866122-23866170,23866276-238663...    30   0.92 
08_02_1012 + 23550314-23551504                                         27   6.5  
04_01_0422 + 5573833-5574647,5575577-5575692,5576922-5577130,557...    27   6.5  
02_05_0887 + 32516255-32517292                                         27   6.5  
04_04_0920 + 29429114-29430934                                         27   8.6  

>12_02_0871 +
           23865343-23866016,23866122-23866170,23866276-23866356,
           23866599-23866718,23866957-23867055,23867135-23867194,
           23867316-23867410,23867483-23867508,23869212-23869285,
           23870194-23870259,23871027-23871099,23871585-23871622,
           23873758-23873871,23876079-23876195,23876288-23876368,
           23876468-23876536,23876631-23876669,23876809-23876973,
           23877380-23877484,23877569-23877637,23877754-23877816,
           23877903-23878021,23878124-23878348,23878409-23878610
          Length = 940

 Score = 29.9 bits (64), Expect = 0.92
 Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
 Frame = +3

Query: 69  GEISYDEVAGKD---SDVGRTEDYHKLIEYGLDPKVAAKLDXIYKTGKLAHAELDERALD 239
           G  SYD  A      ++V  T+ Y   +   L   V   L  I +       ++D   + 
Sbjct: 664 GHDSYDRQAKAPRLYNEVSDTDPYEAAV-VSLPSAVKELLLRILRLRIGTRYDIDIHCIR 722

Query: 240 ALKEFPSDGALSVLGQFLDSNLEHVSNKSAFLCGVMKTYR 359
           +L E P   A++VL QFL S  +   NK  +   ++  Y+
Sbjct: 723 SLNELPEKAAVAVLNQFLISGADK-HNKGDYFASLIAKYQ 761


>08_02_1012 + 23550314-23551504
          Length = 396

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = -1

Query: 276 HLKHRRMEILLRHLEHARPTLRALAFQSYKCXRAWRLP*DP 154
           H  +RR+ +LL      RP L A A  +     AW    DP
Sbjct: 91  HSAYRRLSLLLNRSHPDRPCLHAFADAARLVAEAWAFLFDP 131


>04_01_0422 +
           5573833-5574647,5575577-5575692,5576922-5577130,
           5579676-5579795,5581616-5581744,5581828-5581953,
           5582945-5583000,5583084-5583183,5585155-5585272,
           5585374-5585583,5585902-5586226,5587094-5587187,
           5588021-5588129,5588246-5588514,5589153-5589280,
           5589983-5590217,5590858-5591046,5591326-5591609,
           5591698-5591890,5592040-5592207,5592429-5592514,
           5594391-5594550
          Length = 1412

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = -3

Query: 319 LDTCSRFESKNCPRTLKAPSD 257
           LD  SR ESK CP  L  P D
Sbjct: 524 LDALSRCESKTCPSELITPPD 544


>02_05_0887 + 32516255-32517292
          Length = 345

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +2

Query: 218 VGRACSRCLKRISIRRCFKCSWTIFRFKSRTCIQ*KCFFVWSYEDL 355
           V  AC  C  ++      + + +    K RTC+Q  C FV +Y++L
Sbjct: 128 VDLACPLCRGKVKGWTIVEPARSYLNGKRRTCMQDGCSFVGTYKEL 173


>04_04_0920 + 29429114-29430934
          Length = 606

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
 Frame = +3

Query: 69  GEISYDEVAGKDSDVGRTED----YHKLIEYGLDPKVAAKLDXIYKTGKLAHAELDERAL 236
           G+++Y  V      +GR++     + ++I+ G D  V A  + I   GK++ A    R L
Sbjct: 399 GQVTYASVINVYCQLGRSDRAESVFSEMIDRGFDKCVVAYGNMISMYGKISRASDAMRLL 458

Query: 237 DALKEFPSDGALSVLGQFLD 296
             +K+   +  + V    LD
Sbjct: 459 AVMKKKGCEPNIWVYNSLLD 478


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,452,407
Number of Sequences: 37544
Number of extensions: 224479
Number of successful extensions: 519
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)