Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4c01
         (314 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000E81815 Cluster: PREDICTED: hypothetical protein;...    33   1.2  
UniRef50_O75251 Cluster: NADH dehydrogenase [ubiquinone] iron-su...    32   2.9  

>UniRef50_UPI0000E81815 Cluster: PREDICTED: hypothetical protein;
           n=1; Gallus gallus|Rep: PREDICTED: hypothetical protein
           - Gallus gallus
          Length = 187

 Score = 33.1 bits (72), Expect = 1.2
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +2

Query: 14  YGVLXLQKXIXRMKTIQVWYR 76
           YG+L LQK I R + +Q+WYR
Sbjct: 166 YGILQLQKKIKRERKLQIWYR 186


>UniRef50_O75251 Cluster: NADH dehydrogenase [ubiquinone]
           iron-sulfur protein 7, mitochondrial precursor; n=9;
           Catarrhini|Rep: NADH dehydrogenase [ubiquinone]
           iron-sulfur protein 7, mitochondrial precursor - Homo
           sapiens (Human)
          Length = 213

 Score = 31.9 bits (69), Expect = 2.9
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2

Query: 14  YGVLXLQKXIXRMKTIQVWYR 76
           YG+L LQ+ I R + +Q+WYR
Sbjct: 192 YGILQLQRKIKRERRLQIWYR 212


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,344,298
Number of Sequences: 1657284
Number of extensions: 1587564
Number of successful extensions: 1805
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1805
length of database: 575,637,011
effective HSP length: 81
effective length of database: 441,397,007
effective search space used: 10152131161
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)