Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4b24
(721 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_08_0096 - 28327308-28327389,28329175-28329280,28329375-28329561 100 2e-21
04_03_0314 - 14238620-14240128 31 0.92
11_06_0099 + 20070925-20073867 29 2.8
09_02_0190 + 5556223-5556705 29 2.8
08_02_1472 + 27357001-27357277,27357362-27357369 29 2.8
04_04_0261 + 24007790-24009098,24009191-24011118 29 4.9
03_06_0353 - 33317015-33318235,33318567-33318824,33319587-333199... 29 4.9
05_07_0167 + 28115290-28115349,28115952-28115996,28116087-281161... 28 6.5
01_06_0916 + 32950575-32950656,32952061-32952272,32952408-329524... 28 8.6
01_01_1220 + 9862195-9862281,9862427-9862646,9862764-9862916,986... 28 8.6
>11_08_0096 - 28327308-28327389,28329175-28329280,28329375-28329561
Length = 124
Score = 99.5 bits (237), Expect = 2e-21
Identities = 44/94 (46%), Positives = 67/94 (71%)
Frame = +3
Query: 282 YVKLVSSDGHEFIVKREHALISGTIKAMLSGPGQFAENEANEVNFREIPSHVLQKVCMYF 461
+VKL+S++G EF+V ++ A++S T++ ML+ PG F+E EV F EI + +L+K+C YF
Sbjct: 31 FVKLISAEGFEFVVDKKAAMVSNTLRNMLTSPGGFSETREGEVRFPEISTPILEKICQYF 90
Query: 462 TYKVRYTNSSTEIPEFPIAPEIALEVLMAANFLD 563
+ + Y +S E EF I PEI LE++MAAN+LD
Sbjct: 91 YWSLHY-SSGKETSEFQIEPEITLELMMAANYLD 123
>04_03_0314 - 14238620-14240128
Length = 502
Score = 31.1 bits (67), Expect = 0.92
Identities = 15/50 (30%), Positives = 20/50 (40%)
Frame = -1
Query: 364 IALIVPDIRACSLFTMNSCPSEDTSFTYIASGPSHPPYTFSSPPILPDPL 215
IA + PD+ F CP FT++ + H PP P PL
Sbjct: 203 IAHLAPDLGLAMDFRATLCPQHPDLFTFVNTSHGHALQLVDPPPPPPPPL 252
>11_06_0099 + 20070925-20073867
Length = 980
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +1
Query: 106 LTYLHKQLHISLSKKSLSGKCP 171
+TYLH+ ++++LS LSGK P
Sbjct: 781 ITYLHRLINLNLSSNYLSGKIP 802
>09_02_0190 + 5556223-5556705
Length = 160
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 285 VKLVSSDGHEFIVKREHALISGTIKAMLSG 374
+ LVS DG F V R+ AL+ T++ M+ G
Sbjct: 16 IDLVSKDGERFEVARDAALLCKTLRWMIKG 45
>08_02_1472 + 27357001-27357277,27357362-27357369
Length = 94
Score = 29.5 bits (63), Expect = 2.8
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = -1
Query: 223 DPLAECCSSATLVTEGCS 170
DP AECCS+ + +++GC+
Sbjct: 54 DPSAECCSALSSISQGCA 71
>04_04_0261 + 24007790-24009098,24009191-24011118
Length = 1078
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +3
Query: 480 TNSSTEIPEFPIAPEIALEVL 542
TN S +PEFP A E +LEVL
Sbjct: 309 TNLSGSLPEFPAAGEASLEVL 329
>03_06_0353 - 33317015-33318235,33318567-33318824,33319587-33319904,
33319949-33320011,33320103-33320496,33320684-33320796,
33320932-33321639,33321667-33323199,33323395-33323607,
33323718-33324700,33324890-33325423,33325694-33325820,
33326083-33326162,33327347-33327377,33327949-33328053,
33328119-33328124,33328349-33328985,33329144-33329478,
33330394-33331113
Length = 2792
Score = 28.7 bits (61), Expect = 4.9
Identities = 22/64 (34%), Positives = 28/64 (43%)
Frame = -1
Query: 442 WSTCDGISLKLTSLASFSANWPGPLSIALIVPDIRACSLFTMNSCPSEDTSFTYIASGPS 263
W ISL L+ + S N P S P+ C+L + P D SF+ IA GP
Sbjct: 1619 WLCAWFISLHLSLMHHSSKNLPLTTS-----PEDLLCALRKIPCIPLSDGSFSSIADGPI 1673
Query: 262 HPPY 251
PY
Sbjct: 1674 WLPY 1677
>05_07_0167 +
28115290-28115349,28115952-28115996,28116087-28116179,
28116259-28116342,28116949-28117131,28117234-28117276,
28117671-28117891,28118060-28118137,28118404-28118529,
28118616-28118825
Length = 380
Score = 28.3 bits (60), Expect = 6.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 280 IASGPSHPPYTFSSPPILPDP 218
IASG + PPY + PI+P P
Sbjct: 52 IASGHAPPPYMWGPQPIMPPP 72
>01_06_0916 +
32950575-32950656,32952061-32952272,32952408-32952448,
32952916-32952959,32953259-32953561,32954145-32954302,
32954849-32954965,32955562-32955747,32955872-32956031,
32956079-32956151,32958613-32958889,32959024-32959099,
32960653-32960720,32961270-32961361,32961505-32961578,
32961777-32961820,32962155-32962206,32962585-32962704,
32962777-32962889,32963023-32963110,32963492-32963577,
32964172-32964258,32964491-32964594,32964996-32965098,
32965250-32965345,32965456-32965645,32965777-32965838,
32966014-32966118,32966782-32966983,32967092-32967300,
32968510-32968673,32968799-32968850,32968935-32969021,
32969319-32969441,32969567-32969605,32969606-32969860
Length = 1447
Score = 27.9 bits (59), Expect = 8.6
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +3
Query: 309 HEFIVKREHALISGTIKAMLSGPGQFAENEANEVNFREIPSHVLQKVCMYFTYKVRYTNS 488
H F++ + TIKA+ G + + ++ PS L K C F V ++
Sbjct: 131 HTFVLYLGPHIALFTIKAVQCGRIDLKTAPYDTIQLKQGPSW-LDKKCSDFGPPVYQASA 189
Query: 489 -STEIPEFPIAPEIALEVLM 545
S IP F + P++ LE ++
Sbjct: 190 HSVRIPVFELLPQVQLEAVL 209
>01_01_1220 +
9862195-9862281,9862427-9862646,9862764-9862916,
9863016-9863674,9863749-9863852,9863950-9864192,
9864262-9864376,9864696-9864909,9864995-9865511,
9866439-9866448,9867363-9867551,9867755-9868084,
9868639-9868872,9869303-9869743
Length = 1171
Score = 27.9 bits (59), Expect = 8.6
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -1
Query: 403 LASFSANWPGPLSIALIVPDIRACSLFTM-NSCPSEDTSFTYIASGPSHPPYTFSS 239
+ASFSA PG L+ A++ PD+ A + + + P+ D PS P+ S
Sbjct: 510 VASFSARGPGGLTEAILKPDLMAPGVSILAATIPTADKEDVPAGKNPS--PFAIKS 563
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,187,428
Number of Sequences: 37544
Number of extensions: 342306
Number of successful extensions: 982
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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