Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4b24
(721 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC090999-17|AAK26155.1| 124|Caenorhabditis elegans Elongin c pr... 182 3e-46
U41509-1|AAA82628.2| 163|Caenorhabditis elegans Elongin c prote... 100 2e-21
Z81123-5|CAB76411.2| 393|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z50071-9|CAA90404.3| 393|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z83109-7|CAB05516.1| 167|Caenorhabditis elegans Hypothetical pr... 29 4.4
CU457741-7|CAM36348.1| 710|Caenorhabditis elegans Hypothetical ... 29 4.4
AF440507-1|AAL34095.1| 167|Caenorhabditis elegans SKR-3 protein. 29 4.4
AF125951-2|AAD14691.1| 643|Caenorhabditis elegans Hypothetical ... 29 4.4
Z93377-11|CAM84803.1| 332|Caenorhabditis elegans Hypothetical p... 28 7.7
Z81513-15|CAM84808.1| 332|Caenorhabditis elegans Hypothetical p... 28 7.7
Z81084-6|CAB03110.1| 176|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z81072-16|CAB03027.1| 176|Caenorhabditis elegans Hypothetical p... 28 7.7
AF440505-1|AAL34093.1| 170|Caenorhabditis elegans SKR-1 protein. 28 7.7
>AC090999-17|AAK26155.1| 124|Caenorhabditis elegans Elongin c
protein 1 protein.
Length = 124
Score = 182 bits (442), Expect = 3e-46
Identities = 83/109 (76%), Positives = 95/109 (87%)
Frame = +3
Query: 240 EEKVYGGCEGPDAMYVKLVSSDGHEFIVKREHALISGTIKAMLSGPGQFAENEANEVNFR 419
+ K YGG EGP + YVKLVSSD HEFI+KRE AL SGTI+AMLSGPG +AENE+N V FR
Sbjct: 16 QPKQYGGIEGPTSQYVKLVSSDDHEFIIKRELALTSGTIRAMLSGPGVYAENESNVVYFR 75
Query: 420 EIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPEIALEVLMAANFLDC 566
EIPSHVLQKVC YF YKVRYT+++TEIPEFPI P++ALE+LMAANFLDC
Sbjct: 76 EIPSHVLQKVCQYFAYKVRYTHAATEIPEFPIPPDVALELLMAANFLDC 124
>U41509-1|AAA82628.2| 163|Caenorhabditis elegans Elongin c protein
2 protein.
Length = 163
Score = 99.5 bits (237), Expect = 2e-21
Identities = 48/103 (46%), Positives = 66/103 (64%)
Frame = +3
Query: 258 GCEGPDAMYVKLVSSDGHEFIVKREHALISGTIKAMLSGPGQFAENEANEVNFREIPSHV 437
G EGP + YVKLVS+D HEFI+KRE A+ S +++ + + P N V F + SH+
Sbjct: 62 GLEGPRSKYVKLVSNDDHEFIIKREVAMTSKSLRELFANPTVDLAAANNTVYFSDFQSHI 121
Query: 438 LQKVCMYFTYKVRYTNSSTEIPEFPIAPEIALEVLMAANFLDC 566
LQKVC Y YK +Y +S P F I P+IA+++L AAN L+C
Sbjct: 122 LQKVCHYLAYKTKYRHSRV-APPFDIPPDIAMDLLAAANELEC 163
>Z81123-5|CAB76411.2| 393|Caenorhabditis elegans Hypothetical
protein T07D4.1 protein.
Length = 393
Score = 29.5 bits (63), Expect = 2.5
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Frame = -3
Query: 407 LVSFIFSKLARSAEHSLNSA*YKSMLPLHNELMSIRGYQFHIHSIWTFTSSI-HLLFTTD 231
LV+F + A++ + SA ++ +P+ N I Y + ++ S I HLL+T+D
Sbjct: 167 LVNFPYFLYAQNYTYLGVSACFRGSMPIWNSFSFIVWYLIPLTALVFIYSRISHLLWTSD 226
Query: 230 TARSTS*MLFISNISYRRLLGH 165
+ R +S SN S R G+
Sbjct: 227 SNRQSSRQSHESNGSLERGNGY 248
>Z50071-9|CAA90404.3| 393|Caenorhabditis elegans Hypothetical
protein T07D4.1 protein.
Length = 393
Score = 29.5 bits (63), Expect = 2.5
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Frame = -3
Query: 407 LVSFIFSKLARSAEHSLNSA*YKSMLPLHNELMSIRGYQFHIHSIWTFTSSI-HLLFTTD 231
LV+F + A++ + SA ++ +P+ N I Y + ++ S I HLL+T+D
Sbjct: 167 LVNFPYFLYAQNYTYLGVSACFRGSMPIWNSFSFIVWYLIPLTALVFIYSRISHLLWTSD 226
Query: 230 TARSTS*MLFISNISYRRLLGH 165
+ R +S SN S R G+
Sbjct: 227 SNRQSSRQSHESNGSLERGNGY 248
>Z83109-7|CAB05516.1| 167|Caenorhabditis elegans Hypothetical
protein F44G3.6 protein.
Length = 167
Score = 28.7 bits (61), Expect = 4.4
Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 14/107 (13%)
Frame = +3
Query: 285 VKLVSSDGHEFIVKREHALISGTIKAMLSGPG--QFAENEANEVNFREIPSHVLQKVCMY 458
+KL SSD F V R+ S TI ++ G + + + +++ S +L+K+ +
Sbjct: 10 IKLTSSDDKTFTVSRKVISQSKTITDIIQNLGIEESGSTSEDTIPLQKVTSTILEKIITW 69
Query: 459 FTY-------KVRYTNSSTEIPEF-----PIAPEIALEVLMAANFLD 563
+ KV + +I E+ + E+++AAN+LD
Sbjct: 70 CEHHADDEPKKVDENKKTVDISEWDAEFMKVDQGTLFEIILAANYLD 116
>CU457741-7|CAM36348.1| 710|Caenorhabditis elegans Hypothetical
protein C42C1.7 protein.
Length = 710
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -3
Query: 296 YQFHIHSIWT-FTSSIHLLFTTDTARSTS*MLFISNISYRRLLGHFPL 156
Y F + I+T FT + LL D S + +I +ISY L H+P+
Sbjct: 297 YSFLLRPIFTLFTGILMLLSVDDYYLSNRVLTYIGDISYSLYLIHWPI 344
>AF440507-1|AAL34095.1| 167|Caenorhabditis elegans SKR-3 protein.
Length = 167
Score = 28.7 bits (61), Expect = 4.4
Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 14/107 (13%)
Frame = +3
Query: 285 VKLVSSDGHEFIVKREHALISGTIKAMLSGPG--QFAENEANEVNFREIPSHVLQKVCMY 458
+KL SSD F V R+ S TI ++ G + + + +++ S +L+K+ +
Sbjct: 10 IKLTSSDDKTFTVSRKVISQSKTITDIIQNLGIEESGSTSEDTIPLQKVTSTILEKIITW 69
Query: 459 FTY-------KVRYTNSSTEIPEF-----PIAPEIALEVLMAANFLD 563
+ KV + +I E+ + E+++AAN+LD
Sbjct: 70 CEHHADDEPKKVDENKKTVDISEWDAEFMKVDQGTLFEIILAANYLD 116
>AF125951-2|AAD14691.1| 643|Caenorhabditis elegans Hypothetical
protein D2063.2 protein.
Length = 643
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -3
Query: 263 TSSIHLLFTTDTARSTS*MLFISNISYRRLLGHFPLRDF 147
T+S+ L+ DT S + +I +ISY L H+P+ F
Sbjct: 255 TASLMLISADDTILSNRLLTYIGDISYSLYLVHWPIYAF 293
>Z93377-11|CAM84803.1| 332|Caenorhabditis elegans Hypothetical
protein F13A7.14 protein.
Length = 332
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Frame = -1
Query: 301 EDTSFTYIASGPSHPPYTF--SSPPILPDP 218
+D + + GPS PY F S PP+ P P
Sbjct: 22 DDDDYAELQPGPSPKPYRFTESEPPVPPPP 51
>Z81513-15|CAM84808.1| 332|Caenorhabditis elegans Hypothetical
protein F13A7.14 protein.
Length = 332
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Frame = -1
Query: 301 EDTSFTYIASGPSHPPYTF--SSPPILPDP 218
+D + + GPS PY F S PP+ P P
Sbjct: 22 DDDDYAELQPGPSPKPYRFTESEPPVPPPP 51
>Z81084-6|CAB03110.1| 176|Caenorhabditis elegans Hypothetical
protein F46A9.5 protein.
Length = 176
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +3
Query: 285 VKLVSSDGHEFIVKREHALISGTIKAMLSGPGQFAE--NEANEVNFREIPSHVLQKV 449
+K+ SSD F+V R +S TI +L G E A + + + + +L+KV
Sbjct: 16 IKISSSDNEIFLVPRNVIRLSNTINTLLMDLGLDDEEGTNAEPIPVQNVTASILKKV 72
>Z81072-16|CAB03027.1| 176|Caenorhabditis elegans Hypothetical
protein F46A9.5 protein.
Length = 176
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +3
Query: 285 VKLVSSDGHEFIVKREHALISGTIKAMLSGPGQFAE--NEANEVNFREIPSHVLQKV 449
+K+ SSD F+V R +S TI +L G E A + + + + +L+KV
Sbjct: 16 IKISSSDNEIFLVPRNVIRLSNTINTLLMDLGLDDEEGTNAEPIPVQNVTASILKKV 72
>AF440505-1|AAL34093.1| 170|Caenorhabditis elegans SKR-1 protein.
Length = 170
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +3
Query: 285 VKLVSSDGHEFIVKREHALISGTIKAMLSGPGQFAE--NEANEVNFREIPSHVLQKV 449
+K+ SSD F+V R +S TI +L G E A + + + + +L+KV
Sbjct: 10 IKISSSDNEIFLVPRNVIRLSNTINTLLMDLGLDDEEGTNAEPIPVQNVTASILKKV 66
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,354,529
Number of Sequences: 27780
Number of extensions: 311398
Number of successful extensions: 895
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -