Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4b22
(494 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 100 2e-22
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 52 4e-08
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 47 1e-06
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 44 1e-05
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 35 0.008
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 35 0.008
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 31 0.095
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 30 0.17
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 29 0.51
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 27 1.6
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 26 2.7
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 25 4.7
SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch... 25 6.3
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 25 6.3
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo... 25 8.3
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 99.5 bits (237), Expect = 2e-22
Identities = 47/117 (40%), Positives = 60/117 (51%), Gaps = 13/117 (11%)
Frame = +3
Query: 42 CFXCNRTGHFARDCKEXADR--CYXCNGTGHXARECAQSPDE---PSCYNCNKTGHXXRN 206
C+ CN+TGH A +C E CY C GH R+C SP+ CY C + GH R+
Sbjct: 38 CYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARD 97
Query: 207 CPEGGRES--------ATQTCYNCXKSGHISRNCPDGTKTCYVCGKPGHISRECDEA 353
C G++S + CY C GH +R+C G K CY CGK GH S EC +A
Sbjct: 98 CRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGVK-CYSCGKIGHRSFECQQA 153
Score = 97.5 bits (232), Expect = 1e-21
Identities = 44/119 (36%), Positives = 60/119 (50%), Gaps = 13/119 (10%)
Frame = +3
Query: 27 RQREKCFXCNRTGHFARDCKEXADRCYXCNGTGHXARECAQSPDEPSCYNCNKTGHXXRN 206
R +C+ C GH AR+C + + CY CN TGH A EC + E +CY C GH R+
Sbjct: 14 RPGPRCYNCGENGHQARECTKGSI-CYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRD 72
Query: 207 CPEGGRESATQTCYNCXKSGHISRNC-PDGTKT------------CYVCGKPGHISREC 344
CP CY C + GHI+R+C +G ++ CY CG GH +R+C
Sbjct: 73 CPSSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDC 131
Score = 71.7 bits (168), Expect = 6e-14
Identities = 36/99 (36%), Positives = 45/99 (45%), Gaps = 13/99 (13%)
Frame = +3
Query: 27 RQREKCFXCNRTGHFARDCKEXADR-------------CYXCNGTGHXARECAQSPDEPS 167
RQ +C+ C R GH ARDC+ + CY C GH AR+C
Sbjct: 80 RQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGV---K 136
Query: 168 CYNCNKTGHXXRNCPEGGRESATQTCYNCXKSGHISRNC 284
CY+C K GH C + S Q CY C + GHI+ NC
Sbjct: 137 CYSCGKIGHRSFECQQA---SDGQLCYKCNQPGHIAVNC 172
Score = 70.1 bits (164), Expect = 2e-13
Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Frame = +3
Query: 162 PSCYNCNKTGHXXRNCPEGGRESATQTCYNCXKSGHISRNC--PDGTKTCYVCGKPGHIS 335
P CYNC + GH R C +G CYNC ++GH + C P KTCY CG GH+
Sbjct: 17 PRCYNCGENGHQARECTKGS------ICYNCNQTGHKASECTEPQQEKTCYACGTAGHLV 70
Query: 336 RECDEARN 359
R+C + N
Sbjct: 71 RDCPSSPN 78
Score = 64.5 bits (150), Expect = 8e-12
Identities = 27/64 (42%), Positives = 32/64 (50%)
Frame = +3
Query: 18 GFDRQREKCFXCNRTGHFARDCKEXADRCYXCNGTGHXARECAQSPDEPSCYNCNKTGHX 197
G R C+ C GH ARDC +CY C GH + EC Q+ D CY CN+ GH
Sbjct: 110 GGHRSNMNCYACGSYGHQARDCTMGV-KCYSCGKIGHRSFECQQASDGQLCYKCNQPGHI 168
Query: 198 XRNC 209
NC
Sbjct: 169 AVNC 172
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 52.4 bits (120), Expect = 4e-08
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 8/99 (8%)
Frame = +3
Query: 27 RQREK-CFXCNRTGHFARDCKEXADR---CYXCNGTGHXARECA-QSPDE-PSCYNCNKT 188
R R+K CF C + GH +DC E D C+ C H C+ + P + C+ C++
Sbjct: 73 RNRDKFCFACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACSKKGPLKFAKCFICHEN 132
Query: 189 GHXXRNCPEG--GRESATQTCYNCXKSGHISRNCPDGTK 299
GH C + G C C H++++C K
Sbjct: 133 GHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDCDQVNK 171
Score = 45.6 bits (103), Expect = 4e-06
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Frame = +3
Query: 135 RECAQSPDEPSCYNCNKTGHXXRNCPEGGRESATQTCYNCXKSGHISRNC----PDGTKT 302
R Q + C+ C + GH ++CPE + C+ C H C P
Sbjct: 68 RRINQRNRDKFCFACRQQGHIVQDCPEA--KDNVSICFRCGSKEHSLNACSKKGPLKFAK 125
Query: 303 CYVCGKPGHISRECDE 350
C++C + GH+S +C++
Sbjct: 126 CFICHENGHLSGQCEQ 141
Score = 28.7 bits (61), Expect = 0.51
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +3
Query: 297 KTCYVCGKPGHISRECDEARN 359
K C+ C + GHI ++C EA++
Sbjct: 77 KFCFACRQQGHIVQDCPEAKD 97
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 47.2 bits (107), Expect = 1e-06
Identities = 25/64 (39%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +3
Query: 168 CYNCNKTGHXXRNCPEGGRESATQTCYNCXK-SGHISRNCPDGTKTCYVCGKPGHISREC 344
C+NC GH ++CP C C HIS CP TK C CG GHI+ C
Sbjct: 89 CHNCKGNGHISKDCPH-------VLCTTCGAIDDHISVRCP-WTKKCMNCGLLGHIAARC 140
Query: 345 DEAR 356
E R
Sbjct: 141 SEPR 144
Score = 46.8 bits (106), Expect = 2e-06
Identities = 25/83 (30%), Positives = 30/83 (36%), Gaps = 1/83 (1%)
Frame = +3
Query: 42 CFXCNRTGHFARDCKEXADRCYXCNG-TGHXARECAQSPDEPSCYNCNKTGHXXRNCPEG 218
C C GH ++DC C C H + C P C NC GH C E
Sbjct: 89 CHNCKGNGHISKDCPHVL--CTTCGAIDDHISVRC---PWTKKCMNCGLLGHIAARCSE- 142
Query: 219 GRESATQTCYNCXKSGHISRNCP 287
R+ + C C H S CP
Sbjct: 143 PRKRGPRVCRTCHTDTHTSSTCP 165
Score = 43.2 bits (97), Expect = 2e-05
Identities = 29/102 (28%), Positives = 39/102 (38%), Gaps = 5/102 (4%)
Frame = +3
Query: 54 NRTGHFARDCKEXADRCYXCNGTGHXARECAQSPDEPSCYNCNKTG-HXXRNCPEGGRES 230
+R +F D E C+ C G GH +++C C C H CP
Sbjct: 74 SRGRYFGSDPSESIV-CHNCKGNGHISKDCPHV----LCTTCGAIDDHISVRCPW----- 123
Query: 231 ATQTCYNCXKSGHISRNCPD----GTKTCYVCGKPGHISREC 344
T+ C NC GHI+ C + G + C C H S C
Sbjct: 124 -TKKCMNCGLLGHIAARCSEPRKRGPRVCRTCHTDTHTSSTC 164
Score = 29.1 bits (62), Expect = 0.38
Identities = 26/106 (24%), Positives = 33/106 (31%), Gaps = 20/106 (18%)
Frame = +3
Query: 36 EKCFXCNRTGHFARDCKEXADR----CYXCNGTGHXARECA----------------QSP 155
+KC C GH A C E R C C+ H + C S
Sbjct: 125 KKCMNCGLLGHIAARCSEPRKRGPRVCRTCHTDTHTSSTCPLIWRYYVEKEHPVRIDVSE 184
Query: 156 DEPSCYNCNKTGHXXRNCPEGGRESATQTCYNCXKSGHISRNCPDG 293
CYNC H +C R + ++ C NCP G
Sbjct: 185 VRKFCYNCASDEHFGDDCTLPSRSNYPESTAFC------EANCPSG 224
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 44.4 bits (100), Expect = 1e-05
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 168 CYNCNKTGHXXRNCPEGGRESATQTCYNCXKSGHISRNCP 287
C NC GH +CPE + C +C GHI+R+CP
Sbjct: 311 CQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCP 350
Score = 39.1 bits (87), Expect = 4e-04
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = +3
Query: 222 RESATQTCYNCXKSGHISRNCPDGTK-----TCYVCGKPGHISRECDEARN*PQPP 374
R+ Q C NC GH +CP+ C CG GHI+R+C R+ QPP
Sbjct: 304 RDDENQVCQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDC-PVRD-QQPP 357
Score = 35.1 bits (77), Expect = 0.006
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Frame = +3
Query: 24 DRQREKCFXCNRTGHFARDCKEXADR-----CYXCNGTGHXARECAQSPDEP 164
D + + C C GH DC E + C C GH AR+C +P
Sbjct: 305 DDENQVCQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCPVRDQQP 356
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 34.7 bits (76), Expect = 0.008
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +3
Query: 267 HISRNCPDGTKTCYVCGKPGHISREC 344
H + CP TCY CGK H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
Score = 26.2 bits (55), Expect = 2.7
Identities = 9/26 (34%), Positives = 10/26 (38%)
Frame = +3
Query: 66 HFARDCKEXADRCYXCNGTGHXAREC 143
H + C CY C H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
Score = 24.6 bits (51), Expect = 8.3
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +3
Query: 240 TCYNCXKSGHISRNC 284
TCY C K+ H R C
Sbjct: 1805 TCYKCGKADHNLREC 1819
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 34.7 bits (76), Expect = 0.008
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +3
Query: 267 HISRNCPDGTKTCYVCGKPGHISREC 344
H + CP TCY CGK H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
Score = 26.2 bits (55), Expect = 2.7
Identities = 9/26 (34%), Positives = 10/26 (38%)
Frame = +3
Query: 66 HFARDCKEXADRCYXCNGTGHXAREC 143
H + C CY C H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
Score = 24.6 bits (51), Expect = 8.3
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +3
Query: 240 TCYNCXKSGHISRNC 284
TCY C K+ H R C
Sbjct: 1805 TCYKCGKADHNLREC 1819
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 31.1 bits (67), Expect = 0.095
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +3
Query: 147 QSPDEPSCYNCNKTGHXXRNCPEGGRESATQTCYNCX-KSGHISRNCPDGTKTCYVCG 317
++ ++P+ N + N + T TC NC ++ + R PDG C CG
Sbjct: 603 KNAEKPTVSNAAEDKKGDANTRRANATNPTPTCTNCQTRTTPLWRRSPDGQPLCNACG 660
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 30.3 bits (65), Expect = 0.17
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Frame = +3
Query: 180 NKTGHXXRNCPEGGRESATQTCYN----CXKSGHISRNCPDGTKTCYVC 314
N+ +CP+G E T C+N C +G+IS P VC
Sbjct: 58 NQVNDDYCDCPDGSDEPGTSACHNGKFFCKNTGYISSYIPSNRVDDTVC 106
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 28.7 bits (61), Expect = 0.51
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 219 GRESATQTCYNCXKSGHISRNCPDGTKTCYVCGKP 323
GR+ T+ C NC + GH+ N K C + G+P
Sbjct: 939 GRKPTTRKCSNCGQVGHMKTN-----KICPLFGRP 968
Score = 25.0 bits (52), Expect = 6.3
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Frame = +3
Query: 147 QSPDEPSCYNCNKTGHXXRN--CPEGGR 224
+ P C NC + GH N CP GR
Sbjct: 940 RKPTTRKCSNCGQVGHMKTNKICPLFGR 967
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 27.1 bits (57), Expect = 1.6
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Frame = +3
Query: 135 RECAQSPDEPS-----CYNCNKTGHXXRNCP 212
R A PD+P CY C + GH + CP
Sbjct: 169 RIAASVPDKPPPPGYICYRCGQKGHWIQACP 199
Score = 25.8 bits (54), Expect = 3.6
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +3
Query: 243 CYNCXKSGHISRNCPDGTKTCYVCGKP 323
CY C + GH + CP Y GKP
Sbjct: 185 CYRCGQKGHWIQACPTNADPNY-DGKP 210
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 26.2 bits (55), Expect = 2.7
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = -3
Query: 123 QCRYXCSNGQPXPCNPSQSVLCGCTXSTSHV 31
+C+Y C G C+ + ++ C CT + V
Sbjct: 488 RCKYKCHLGSCGTCSETLTIPCRCTANEVQV 518
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 25.4 bits (53), Expect = 4.7
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +3
Query: 285 PDGTKTCYVCGKPGHISRECDEARN 359
PDGT YV +PG IS +A N
Sbjct: 64 PDGTTMVYVFPRPGTISPWSSKATN 88
>SPAC17G8.11c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 25.0 bits (52), Expect = 6.3
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -2
Query: 454 IVCRAWRPLLIVRAWHH 404
I+ AWR L AWHH
Sbjct: 213 IIWSAWRKLPDAEAWHH 229
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 25.0 bits (52), Expect = 6.3
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
Frame = +3
Query: 15 SGFDRQREKCFXCNRTGHFARD------CKEXADRCYXCN 116
+GF + KC CN HF D C+E +RCY C+
Sbjct: 239 TGF-KGHPKCEFCNT--HFYDDDELFKHCREKHERCYICD 275
>SPBC31F10.10c |||zf-MYND type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 24.6 bits (51), Expect = 8.3
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 27 RQREKCFXCNRTGHFARDCKEXA 95
RQ KC C RT + +++C+ A
Sbjct: 493 RQFAKCRRCRRTKYCSKECQHQA 515
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,662,399
Number of Sequences: 5004
Number of extensions: 27908
Number of successful extensions: 158
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -