Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4b22
         (494 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              26   0.19 
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    23   2.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   3.1  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   3.1  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          22   4.1  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   7.2  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   7.2  

>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 26.2 bits (55), Expect = 0.19
 Identities = 10/33 (30%), Positives = 13/33 (39%)
 Frame = +3

Query: 162 PSCYNCNKTGHXXRNCPEGGRESATQTCYNCXK 260
           P C  C    H  + CP+G +   T    N  K
Sbjct: 76  PICGACGDIAHTVKYCPKGTKNPGTLATVNAFK 108



 Score = 22.6 bits (46), Expect = 2.4
 Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
 Frame = +3

Query: 141 CAQSPDEPSCYNCN--KTGHXXRNCPEGGRESATQTCYNCXKSGHISRNCPDGTK 299
           C  + +E + Y  +  K      +CP   R      C  C    H  + CP GTK
Sbjct: 43  CRNNGEEEAYYRKHLLKDADGRVSCPVL-RAYTCPICGACGDIAHTVKYCPKGTK 96


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 325 PGLPHT*HVLVPSGQLREMWPDLXQL*QVXVADSRPP 215
           PGL      L+ SGQL  +  D     +   A+S+PP
Sbjct: 56  PGLAAVLQYLIRSGQLNIISSDHDDSDEEYAANSQPP 92


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -3

Query: 291 RRDSCGRCGRTCXSYSRSXSQTPAP 217
           R +S G CGR   ++  S    P P
Sbjct: 40  RSESSGYCGRRPSTFGSSNEALPQP 64


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -3

Query: 291 RRDSCGRCGRTCXSYSRSXSQTPAP 217
           R +S G CGR   ++  S    P P
Sbjct: 40  RSESSGYCGRRPSTFGSSNEALPQP 64


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 275 PQLSRRHQDVLRVRQARPHLARVRR 349
           P+L+ R   V     ARPH + V R
Sbjct: 110 PELTNRKSVVFHHDNARPHTSLVTR 134


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 275 PQLSRRHQDVLRVRQARPHLARVRR 349
           P+L+ R   V     ARPH + V R
Sbjct: 232 PELTNRKGVVFHHDNARPHTSLVTR 256


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +3

Query: 315 GKPGHISRECDEARN*PQPPCLPYNQL 395
           G PGH        ++ P P   PYN++
Sbjct: 60  GVPGHHYGAAGSQQDMPYPRFPPYNRM 86


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,274
Number of Sequences: 438
Number of extensions: 2363
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13667319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)