Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4b16
         (595 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q89AT4 Cluster: NADH-quinone oxidoreductase subunit N; ...    35   1.7  
UniRef50_UPI00006CA448 Cluster: hypothetical protein TTHERM_0049...    32   8.8  

>UniRef50_Q89AT4 Cluster: NADH-quinone oxidoreductase subunit N;
           n=1; Buchnera aphidicola (Baizongia pistaciae)|Rep:
           NADH-quinone oxidoreductase subunit N - Buchnera
           aphidicola subsp. Baizongia pistaciae
          Length = 494

 Score = 34.7 bits (76), Expect = 1.7
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
 Frame = +3

Query: 396 IYATILFI--KRNLFFI--IEVTSLVDCDFTLYCK*NQFFVSLNNKYSIXLFCXSKCEDR 563
           I+AT LF   K +L +I  + ++S + C F+ YC    +  +    Y + LFC   C   
Sbjct: 61  IHATTLFHIDKYSLLYIGIVIISSFLACIFSHYCSLTNYLYNFEEFYLLLLFCTIGCVSI 120

Query: 564 VVXINKTLFY 593
           ++  N   F+
Sbjct: 121 IISNNLCTFF 130


>UniRef50_UPI00006CA448 Cluster: hypothetical protein
           TTHERM_00497080; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00497080 - Tetrahymena
           thermophila SB210
          Length = 1797

 Score = 32.3 bits (70), Expect = 8.8
 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
 Frame = +3

Query: 90  FN*FNNVVAYESTIIKAGNVTFGQ-LLVNQKNELLTLYSIGSHKTLLNDILDK*QVKY*P 266
           F+ + N++   +T   +G   F Q LL+N +NE + L+ IGS+K + N IL     +Y  
Sbjct: 142 FSSYQNLIFLTTTY--SGIYVFEQMLLLNNQNEQVFLFEIGSYKQMQNTILMTSDGQYLV 199

Query: 267 LFN 275
           L N
Sbjct: 200 LLN 202


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 485,663,584
Number of Sequences: 1657284
Number of extensions: 8470802
Number of successful extensions: 14065
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14061
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41488046300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)