Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4b16
         (595 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125956-4|AAD14723.1|  353|Caenorhabditis elegans Serpentine re...    28   4.4  
AL110487-7|CAB54431.1|  581|Caenorhabditis elegans Hypothetical ...    27   7.6  
AF016443-3|AAC24281.1|  395|Caenorhabditis elegans Hypothetical ...    27   7.6  

>AF125956-4|AAD14723.1|  353|Caenorhabditis elegans Serpentine
           receptor, class h protein78 protein.
          Length = 353

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +3

Query: 399 YATILFIKRNLFFIIEVTSLVDCDFTLYCK*NQFFVSLNNKYS 527
           Y T+L    N+FF+IE+  +    F +YC  N FF S  NK++
Sbjct: 207 YITLLGRIMNVFFVIEILQI--NYFVIYCIYNLFFSS--NKFT 245


>AL110487-7|CAB54431.1|  581|Caenorhabditis elegans Hypothetical
           protein Y39E4B.10 protein.
          Length = 581

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 414 FIKRNLFFIIEVTSLVDCDFTLYCK*NQFFVSLNNK 521
           F K+NLFF +   +L    F+ + K N FF    NK
Sbjct: 338 FFKKNLFFFLIFNNLEKSIFSNFKKSNTFFQFSKNK 373


>AF016443-3|AAC24281.1|  395|Caenorhabditis elegans Hypothetical
           protein C17E7.7 protein.
          Length = 395

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = -1

Query: 298 KEYGSKPTLNKG*YLTCYLSKMSFRRVL*LPMEY--KVNNSFF 176
           K++GS+P       LTC   KM FRRV+   +EY  K +N+ F
Sbjct: 60  KDFGSQPKQ----VLTCDACKMFFRRVVTEKLEYTCKCSNNCF 98


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,609,038
Number of Sequences: 27780
Number of extensions: 214856
Number of successful extensions: 393
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)