Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4b15
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyce...    26   5.5  
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    25   7.2  
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz...    25   7.2  
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    25   9.5  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    25   9.5  

>SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 303 ECRSPVASTSRDDVDSAQQLYATLNEYLLLEQKSQ 407
           E +S VAS S+D+V S+  L  + +  LL +Q ++
Sbjct: 148 EQKSSVASASKDNVSSSSILQGSASSKLLPDQSAR 182


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 469 AQRTCCAVSKSGSIYPRTCSSGPSI 543
           A+ T  A+ K  S YP  C S P+I
Sbjct: 493 AETTSSAIRKVQSKYPSMCGSSPAI 517


>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
           Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 4/26 (15%)
 Frame = +2

Query: 563 QDEG----EAVSCAVHYCLLHEHIHR 628
           +DEG    + + CA+ YC  H+ +HR
Sbjct: 130 EDEGRRFFQQIICAIEYCHRHKIVHR 155


>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 102 HGSIRVLGPSRPVLKSSGRRAEGGSARAY 188
           H S   +G    + ++  RRA  G+ARAY
Sbjct: 380 HSSSTAVGDGASIHQNVARRAMSGNARAY 408


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 223 ACAEQAAANVVVYARADPPSARRPDDLRTGREGP 122
           AC       V+ + + D P A++P DLRT    P
Sbjct: 120 ACGFDLNTRVLAF-KLDAPEAKKPVDLRTQHNRP 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,356,924
Number of Sequences: 5004
Number of extensions: 42945
Number of successful extensions: 137
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)