Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4b15
         (655 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00055-11|AAN65307.1|  290|Caenorhabditis elegans Hypothetical p...    30   1.6  
U00055-10|AAN65306.1|  181|Caenorhabditis elegans Hypothetical p...    30   1.6  
U00055-9|AAL06042.1|  309|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U00055-8|AAL06043.1|  311|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U40420-1|AAA81430.1| 2214|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z46787-6|CAA86744.1|  392|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z81123-1|CAB03364.2|  405|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>U00055-11|AAN65307.1|  290|Caenorhabditis elegans Hypothetical
           protein R02F2.1d protein.
          Length = 290

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 2/99 (2%)
 Frame = +3

Query: 333 RDDVDSAQQLYATLNEYLLLEQKSQPKLRLPAESESGEVTTGARDGAAHVL-RCLKVW-F 506
           +D + S Q L   L    LL Q        P    SGE   G R+        C      
Sbjct: 2   QDGISSTQLLQMLLQREKLLYQN------YPLSLASGEGMIGWRERNRECAWMCAAAKRI 55

Query: 507 DLPADVLIGAINLFDRFLTKMKVRPCHVPCITVSCMNIS 623
            L  D    A+++FDR +T +K+   +V C+ V  ++I+
Sbjct: 56  GLEMDAASLAVSIFDRVVTSVKIPGKYVNCVAVGSLSIA 94


>U00055-10|AAN65306.1|  181|Caenorhabditis elegans Hypothetical
           protein R02F2.1c protein.
          Length = 181

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 2/99 (2%)
 Frame = +3

Query: 333 RDDVDSAQQLYATLNEYLLLEQKSQPKLRLPAESESGEVTTGARDGAAHVL-RCLKVW-F 506
           +D + S Q L   L    LL Q        P    SGE   G R+        C      
Sbjct: 21  QDGISSTQLLQMLLQREKLLYQN------YPLSLASGEGMIGWRERNRECAWMCAAAKRI 74

Query: 507 DLPADVLIGAINLFDRFLTKMKVRPCHVPCITVSCMNIS 623
            L  D    A+++FDR +T +K+   +V C+ V  ++I+
Sbjct: 75  GLEMDAASLAVSIFDRVVTSVKIPGKYVNCVAVGSLSIA 113


>U00055-9|AAL06042.1|  309|Caenorhabditis elegans Hypothetical
           protein R02F2.1a protein.
          Length = 309

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 2/99 (2%)
 Frame = +3

Query: 333 RDDVDSAQQLYATLNEYLLLEQKSQPKLRLPAESESGEVTTGARDGAAHVL-RCLKVW-F 506
           +D + S Q L   L    LL Q        P    SGE   G R+        C      
Sbjct: 21  QDGISSTQLLQMLLQREKLLYQN------YPLSLASGEGMIGWRERNRECAWMCAAAKRI 74

Query: 507 DLPADVLIGAINLFDRFLTKMKVRPCHVPCITVSCMNIS 623
            L  D    A+++FDR +T +K+   +V C+ V  ++I+
Sbjct: 75  GLEMDAASLAVSIFDRVVTSVKIPGKYVNCVAVGSLSIA 113


>U00055-8|AAL06043.1|  311|Caenorhabditis elegans Hypothetical
           protein R02F2.1b protein.
          Length = 311

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 2/99 (2%)
 Frame = +3

Query: 333 RDDVDSAQQLYATLNEYLLLEQKSQPKLRLPAESESGEVTTGARDGAAHVL-RCLKVW-F 506
           +D + S Q L   L    LL Q        P    SGE   G R+        C      
Sbjct: 21  QDGISSTQLLQMLLQREKLLYQN------YPLSLASGEGMIGWRERNRECAWMCAAAKRI 74

Query: 507 DLPADVLIGAINLFDRFLTKMKVRPCHVPCITVSCMNIS 623
            L  D    A+++FDR +T +K+   +V C+ V  ++I+
Sbjct: 75  GLEMDAASLAVSIFDRVVTSVKIPGKYVNCVAVGSLSIA 113


>U40420-1|AAA81430.1| 2214|Caenorhabditis elegans Hypothetical protein
            F40F4.6 protein.
          Length = 2214

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 255  TVPIMLRAGARHPDAAECRSP 317
            TVPI +  G R+PD A C  P
Sbjct: 1501 TVPICVNGGTRNPDEATCSCP 1521


>Z46787-6|CAA86744.1|  392|Caenorhabditis elegans Hypothetical
           protein C16C10.6 protein.
          Length = 392

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
 Frame = +3

Query: 252 PTVPIMLRAGARHPDAAECRSPVASTSRDDVDSAQQLYATLNEYLLLEQKSQPKLRLPAE 431
           PT P     GAR P A    S  + TSR  ++S +       E    + +  PK+ L  +
Sbjct: 285 PTPPSSDDEGARAPRARRRTSSPSPTSRKSIESRESGSRRSPEGKSEKSEKAPKISLKDK 344

Query: 432 SESGEVTTGAR-DGAAHVLR 488
            +  ++   AR DG   +L+
Sbjct: 345 LKPKKIDKEARLDGLKEILK 364


>Z81123-1|CAB03364.2|  405|Caenorhabditis elegans Hypothetical
           protein T14D7.1 protein.
          Length = 405

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = +3

Query: 255 TVPIMLRAGARHPDAAECRSPVASTSRDDVDSAQQLYATLNEYLLLEQKSQPKLRLP 425
           T PI      R   +A  +  +  + +   D+AQ LYATL ++ L       KLRLP
Sbjct: 280 TAPISTVYALRAALSAIAKEGIDESIQRHKDNAQVLYATLKKHGLEPFVVDEKLRLP 336


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,622,143
Number of Sequences: 27780
Number of extensions: 268552
Number of successful extensions: 905
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)