Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4b15
         (655 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    23   1.9  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   4.5  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   4.5  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   4.5  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   4.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.9  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +3

Query: 228 VPIHPPLAPTVPIMLRAGARHPDAAECRSP 317
           +P  PP+ P +   L   A HP+  +   P
Sbjct: 103 IPTAPPIPPEIQRALEWNAAHPEEDDGGQP 132


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +3

Query: 501 WFDLPADVLIGAINLFDRFLTKMKVRPCHVPCITVSCMNI 620
           W  +PA V+IG   + + F T    R        ++ MN+
Sbjct: 326 WNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAMNV 365


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +3

Query: 501 WFDLPADVLIGAINLFDRFLTKMKVRPCHVPCITVSCMNI 620
           W  +PA V+IG   + + F T    R        ++ MN+
Sbjct: 295 WNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAMNV 334


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +3

Query: 501 WFDLPADVLIGAINLFDRFLTKMKVRPCHVPCITVSCMNI 620
           W  +PA V+IG   + + F T    R        ++ MN+
Sbjct: 346 WNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAMNV 385


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +3

Query: 501 WFDLPADVLIGAINLFDRFLTKMKVRPCHVPCITVSCMNI 620
           W  +PA V+IG   + + F T    R        ++ MN+
Sbjct: 295 WNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAMNV 334


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 211 QAAANVVVYARADPPSARRPDDLRTGREGPS 119
           QA A + +  R +PP  R+     T + GPS
Sbjct: 380 QATAELKLGGRFEPPQIRQAFAEETLQPGPS 410


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,322
Number of Sequences: 438
Number of extensions: 3047
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)