Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4b13
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.06 |msd1|mug172|spindle pole body protein Msd1|Schizosa...    31   0.21 
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp...    26   4.5  
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    26   5.9  

>SPBC13E7.06 |msd1|mug172|spindle pole body protein
           Msd1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 331

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +2

Query: 509 YVGNPELDKLLTENEKLKHRLAILENAIK 595
           YV   ELD +L ENEK KH + IL+   K
Sbjct: 290 YVSIDELDAILEENEKNKHLINILQKENK 318


>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
           Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 431 LLTSFRSYPSFLYVATIVYSFSTSV 357
           +L  F+ YPSF Y AT+V    ++V
Sbjct: 366 VLAFFKGYPSFYYPATLVAPVHSAV 390


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -3

Query: 318 YWKHMFQLVGY 286
           YWKHMF L G+
Sbjct: 279 YWKHMFSLFGF 289


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,391,146
Number of Sequences: 5004
Number of extensions: 43749
Number of successful extensions: 139
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)