Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4b10
         (482 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    24   0.85 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   3.4  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    22   3.4  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   4.5  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   7.9  

>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 23.8 bits (49), Expect = 0.85
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = +2

Query: 230 MNEDVASSLEVFQRVARPPKLHVFRESLRLFIQHFLVKTAGRSGALG 370
           MN+D++ S         PP+  +   S+  +    L+  A  + ALG
Sbjct: 115 MNQDISFSRVKLTNTCSPPQGQLVLSSMHKYQPRILIVKASTAQALG 161


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = +3

Query: 243  WPRRSRCSSGWPGRPSCTCS 302
            WP+ ++C    PG    T S
Sbjct: 1146 WPKSAKCEEKKPGHKPSTSS 1165


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
 Frame = +2

Query: 140 LALSVLKIIQFSELSKRSVRFMRQVL-----LSIIMNEDVASSLEVFQRVARP 283
           + L V+ ++  S   + + R +R+ L     +S+  ++DV+SS+  F+  +RP
Sbjct: 15  VTLLVVLLVHISSSERVTRRRLRRPLKTTQSVSVTKDQDVSSSVNRFRLRSRP 67


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 217 QNLPHEANRPLAQLRELDDLEHRER 143
           QN P +A + L +L ELD   +R R
Sbjct: 31  QNFPSDAIKILNRLEELDLSNNRLR 55


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +3

Query: 264 SSGWPGRP 287
           +S WPGRP
Sbjct: 34  ASSWPGRP 41


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,412
Number of Sequences: 336
Number of extensions: 1535
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11352204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)