Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4b10
(482 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb... 36 0.004
SPAC1610.01 ||SPAC17A5.17|conserved fungal protein|Schizosacchar... 30 0.21
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ... 29 0.37
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe... 27 1.5
SPAC12B10.07 |acp1||F-actin capping protein alpha subunit|Schizo... 27 2.0
SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2 |Schizosacch... 27 2.0
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 26 2.6
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met... 25 6.0
SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-phosphat... 25 7.9
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo... 25 7.9
SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr 1... 25 7.9
>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 35.5 bits (78), Expect = 0.004
Identities = 21/97 (21%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Frame = +2
Query: 5 CEFDRKYQLSIQFTVWDKIKDIENQ--------SKQALTNLAQFLVHLIMEKGLALSVLK 160
C + S QF++WD +++ S + + NLA+ L++E L++LK
Sbjct: 626 CTLQHNLKKSFQFSLWDFFNELQPDDDSEEREISMRRIVNLAKLYASLVIEAAQPLTILK 685
Query: 161 IIQFSELSKRSVRFMRQVLLSIIMN-EDVASSLEVFQ 268
+ F ++ + F+ II+ +D +++F+
Sbjct: 686 HVDFMAINAQMQTFLLVFFTDIILGVKDDLQLVKIFE 722
>SPAC1610.01 ||SPAC17A5.17|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 217
Score = 29.9 bits (64), Expect = 0.21
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = +1
Query: 55 QNKGHREPVET---GANEFSAVPRSFNYGEGPGALGAQDHPVLGAEQAVGSLHAASSAVD 225
QN G + P ET A + P + EG DH +L E++ G+LH A S D
Sbjct: 69 QNSGWKIPYETITLHAKQSKDKPYVYVQLEGEAIRPLLDH-ILKFERSSGTLHEAPSTED 127
Query: 226 HNE 234
NE
Sbjct: 128 ENE 130
>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 581
Score = 29.1 bits (62), Expect = 0.37
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +2
Query: 164 IQFSELSKRSVRFMRQVLLSIIMNEDVASSLEVFQRVARP--PKLHVFRESLRLFIQHF 334
I ++ L RS + L ++ E+ + LEV + P L +F R+F+QHF
Sbjct: 206 ISYTPLKIRSGSIQAGLSLELVTTENNSDVLEVLYQATNGQLPNLDLFNTISRIFMQHF 264
>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 27.1 bits (57), Expect = 1.5
Identities = 23/105 (21%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
Frame = -3
Query: 357 LRPAVFTRKCWMNSRRLSLNTCSLGGRATRWNTSSDEATSSFIMIDSRTCRMKRTDRLLS 178
++P V K W ++ + S+ T + RW + E ++IDS T ++ + + +
Sbjct: 244 VKPEVMNFK-WRSNGKASMTTAIME-EWLRWFDACMEGRKVILLIDSYTPHLRAVENIRN 301
Query: 177 SENWMILSTESARPFSIIK*TRNCAKFV----SACFDWFSMSFIL 55
S N + +T P + ++ C++ V AC+ + +IL
Sbjct: 302 SGNDLRNTTVITLPSTSASISQPCSEGVIYALKACYRKHWVQYIL 346
>SPAC12B10.07 |acp1||F-actin capping protein alpha
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 256
Score = 26.6 bits (56), Expect = 2.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 259 LERRGHVFVHYDRQQNLPHEANRPLA 182
LE R H+ VHY N+ +A+RP++
Sbjct: 168 LEGRSHIRVHYYEDGNVWLDASRPIS 193
>SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 683
Score = 26.6 bits (56), Expect = 2.0
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +1
Query: 73 EPVETGANEFSAVPRSFNYGEGPGALGAQDHPVLGAEQAVGS 198
E +E GAN + + F PGA A D P+ A+ GS
Sbjct: 612 EAIEKGANVENLLDLDFT---DPGATSASDSPITSAQPQSGS 650
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 26.2 bits (55), Expect = 2.6
Identities = 26/105 (24%), Positives = 40/105 (38%)
Frame = +2
Query: 59 IKDIENQSKQALTNLAQFLVHLIMEKGLALSVLKIIQFSELSKRSVRFMRQVLLSIIMNE 238
+KD + + QAL N A + E + ++ S LS + F R + N
Sbjct: 235 LKDSQKERIQALRNKAIKTYSVSTESAERIDSIRSDNLSPLSLNTSSFRRPITKPTPFNS 294
Query: 239 DVASSLEVFQRVARPPKLHVFRESLRLFIQHFLVKTAGRSGALGP 373
D S++ + + K F E Q FL GR+ A P
Sbjct: 295 D--SNISIDPKDNNSNKQDHFAEIEDELRQQFLDIKVGRANASSP 337
>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
metabolism|Schizosaccharomyces pombe|chr 2|||Manual
Length = 811
Score = 25.0 bits (52), Expect = 6.0
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 79 VETGANEFSAVPRSFNYGEGPGALGAQDHPVLGAEQ 186
++ A S+ N+ EGP + QD PV+ EQ
Sbjct: 159 MQQAATYMSSAEDIKNFKEGPVSSSIQDVPVMSTEQ 194
>SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-
phosphatidyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 24.6 bits (51), Expect = 7.9
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -2
Query: 481 FFFKEH*VYSQLKLRFVP 428
FFFK H ++SQL +P
Sbjct: 188 FFFKTHFLFSQLSFECIP 205
>SPAC1805.15c |pub2||ubiquitin-protein ligase
Pub2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 24.6 bits (51), Expect = 7.9
Identities = 12/48 (25%), Positives = 23/48 (47%)
Frame = +2
Query: 119 HLIMEKGLALSVLKIIQFSELSKRSVRFMRQVLLSIIMNEDVASSLEV 262
H+ K LSV+ I +L + + +++V + N SSL++
Sbjct: 166 HVYYLKSPQLSVISAISHEKLENLTPKQLKEVFSQFLFNNQSKSSLKI 213
>SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 386
Score = 24.6 bits (51), Expect = 7.9
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -3
Query: 333 KCWMNSRRLSLNTCSLGGR 277
K W N R L LN C L R
Sbjct: 241 KSWPNLRELGLNDCLLSAR 259
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,477,474
Number of Sequences: 5004
Number of extensions: 24898
Number of successful extensions: 92
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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