Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4b10
(482 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032654-10|CAB63391.1| 819|Caenorhabditis elegans Hypothetical... 57 6e-09
U64855-2|AAB04981.2| 1080|Caenorhabditis elegans Importin beta f... 30 1.0
Z81586-4|CAB04688.2| 366|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z81525-1|CAB04256.1| 897|Caenorhabditis elegans Hypothetical pr... 28 3.1
U49945-1|AAC47925.1| 414|Caenorhabditis elegans Hypothetical pr... 28 3.1
U42436-6|AAM15564.1| 615|Caenorhabditis elegans Not-like (yeast... 28 3.1
U42436-5|AAF99894.2| 796|Caenorhabditis elegans Not-like (yeast... 28 3.1
U19615-1|AAB51351.1| 897|Caenorhabditis elegans Nucampholin pro... 28 3.1
U61949-2|AAB03152.1| 884|Caenorhabditis elegans Puromycin-sensi... 27 5.4
U61949-1|AAY44009.1| 948|Caenorhabditis elegans Puromycin-sensi... 27 5.4
U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical pr... 27 7.1
U39993-2|AAK72059.1| 744|Caenorhabditis elegans Hypothetical pr... 27 7.1
AF045635-1|AAU87830.1| 480|Caenorhabditis elegans Nuclear hormo... 27 7.1
Z81521-2|CAB04224.1| 514|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z48638-6|CAA88567.1| 541|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z19152-2|CAA79544.1| 1150|Caenorhabditis elegans Hypothetical pr... 27 9.4
AF076840-1|AAC95522.1| 514|Caenorhabditis elegans Rad17-like pr... 27 9.4
>AL032654-10|CAB63391.1| 819|Caenorhabditis elegans Hypothetical
protein Y52B11A.10 protein.
Length = 819
Score = 57.2 bits (132), Expect = 6e-09
Identities = 27/109 (24%), Positives = 62/109 (56%), Gaps = 3/109 (2%)
Frame = +2
Query: 5 CEFDRKYQLSIQFTVWDKIKDIENQSKQALTNLAQFLVHLIMEKGLALSVLKIIQFSELS 184
CEF++++ +++QF +WD++++ + +LAQ L HLI + ++++VLK ++++ S
Sbjct: 688 CEFNKRFVITLQFALWDRLRECDQLKPFQRGSLAQLLQHLISNEVMSITVLKTVEWATRS 747
Query: 185 KRSVRFMRQVLLSIIMNEDVASSLEVFQRV---ARPPKLHVFRESLRLF 322
R ++++ L + + + VF+ V + K + E +R+F
Sbjct: 748 ARLTTILKKLFLGLAKSPESVLK-RVFEPVIDQQKRTKFELLSEGMRVF 795
>U64855-2|AAB04981.2| 1080|Caenorhabditis elegans Importin beta
family protein 4,isoform a protein.
Length = 1080
Score = 29.9 bits (64), Expect = 1.0
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +2
Query: 29 LSIQFTVWDKIKDIENQSKQALTNLAQFLVHLIMEKGLALSVL--KIIQFSELSKRSVRF 202
LS+ + KD +Q ++ +++LAQFLV I E + V + + L + S +
Sbjct: 301 LSLDLDLAAVYKDASDQDQKLISSLAQFLVAFIKEHVHLIEVTDEPLTEAKILMRESHDY 360
Query: 203 MRQVLLSIIMNEDV 244
Q+LL I + E++
Sbjct: 361 AIQLLLKITLIEEM 374
>Z81586-4|CAB04688.2| 366|Caenorhabditis elegans Hypothetical
protein T05F1.5 protein.
Length = 366
Score = 28.7 bits (61), Expect = 2.3
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 25 SAIHTVHGVGQNKGHREPVETGANEFSAVPRS 120
S I+ + VG N+GHR P T + + S+ P S
Sbjct: 78 SLINQHNRVGNNQGHRSPSPTSSPQLSSPPPS 109
>Z81525-1|CAB04256.1| 897|Caenorhabditis elegans Hypothetical
protein F33A8.1 protein.
Length = 897
Score = 28.3 bits (60), Expect = 3.1
Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 2/101 (1%)
Frame = +2
Query: 5 CEFDRKYQLSIQFTVWDKIKDIENQSKQALTNLAQFLVHLIMEKGLALSVLKIIQFSELS 184
C +YQ + D I L NLA+ + HL+ + +L ++ +E
Sbjct: 546 CRLRLEYQQYFEKLCQDTYSTIHRIDITKLRNLARLIAHLLSTDAIDWKILADMKMTEED 605
Query: 185 KRSVRFMRQVLLSIIMNE--DVASSLEVFQRVARPPKLHVF 301
S ++ + I NE + +++ RV P H F
Sbjct: 606 TTS---SGRIYIKYIFNELVEAMGMVKLHSRVTDPTLAHCF 643
>U49945-1|AAC47925.1| 414|Caenorhabditis elegans Hypothetical
protein C02H7.2 protein.
Length = 414
Score = 28.3 bits (60), Expect = 3.1
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 278 RPPKLHVFRESLRLFIQHFLV 340
RPP+ V ++ +RLFIQ F+V
Sbjct: 259 RPPRSQVSKKEMRLFIQFFVV 279
>U42436-6|AAM15564.1| 615|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 4, isoform b protein.
Length = 615
Score = 28.3 bits (60), Expect = 3.1
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = -2
Query: 322 EQPQALPEHVQLGRPGHPLEHLERRGHVFVHYDRQQNLPHEANRPLAQLRELDD 161
+ Q P+H+Q HPL+ + + H F+H Q H+ + A + D
Sbjct: 352 QSTQQHPQHLQSSHQQHPLQQNQDQHHSFLHQLHAQQ-QHQQQQFAADMNRQQD 404
>U42436-5|AAF99894.2| 796|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 4, isoform a protein.
Length = 796
Score = 28.3 bits (60), Expect = 3.1
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = -2
Query: 322 EQPQALPEHVQLGRPGHPLEHLERRGHVFVHYDRQQNLPHEANRPLAQLRELDD 161
+ Q P+H+Q HPL+ + + H F+H Q H+ + A + D
Sbjct: 533 QSTQQHPQHLQSSHQQHPLQQNQDQHHSFLHQLHAQQ-QHQQQQFAADMNRQQD 585
>U19615-1|AAB51351.1| 897|Caenorhabditis elegans Nucampholin
protein.
Length = 897
Score = 28.3 bits (60), Expect = 3.1
Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 2/101 (1%)
Frame = +2
Query: 5 CEFDRKYQLSIQFTVWDKIKDIENQSKQALTNLAQFLVHLIMEKGLALSVLKIIQFSELS 184
C +YQ + D I L NLA+ + HL+ + +L ++ +E
Sbjct: 546 CRLRLEYQQYFEKLCQDTYSTIHRIDITKLRNLARLIAHLLSTDAIDWKILADMKMTEED 605
Query: 185 KRSVRFMRQVLLSIIMNE--DVASSLEVFQRVARPPKLHVF 301
S ++ + I NE + +++ RV P H F
Sbjct: 606 TTS---SGRIYIKYIFNELVEAMGMVKLHSRVTDPTLAHCF 643
>U61949-2|AAB03152.1| 884|Caenorhabditis elegans
Puromycin-sensitive aminopeptidaseprotein 1, isoform a
protein.
Length = 884
Score = 27.5 bits (58), Expect = 5.4
Identities = 22/77 (28%), Positives = 32/77 (41%)
Frame = -2
Query: 361 AAAARGLHQEVLDEQPQALPEHVQLGRPGHPLEHLERRGHVFVHYDRQQNLPHEANRPLA 182
A AR HQ +D+ Q + ++ G P HP L G V Y ++ L
Sbjct: 673 ARLARAGHQPTIDKFTQMFNDFLEKGTPIHPDIRLATFG-VVARYGGKEGFD-----KLM 726
Query: 181 QLRELDDLEHRERQALL 131
LRE + ERQ ++
Sbjct: 727 NLRETTTFQEIERQTMV 743
>U61949-1|AAY44009.1| 948|Caenorhabditis elegans
Puromycin-sensitive aminopeptidaseprotein 1, isoform b
protein.
Length = 948
Score = 27.5 bits (58), Expect = 5.4
Identities = 22/77 (28%), Positives = 32/77 (41%)
Frame = -2
Query: 361 AAAARGLHQEVLDEQPQALPEHVQLGRPGHPLEHLERRGHVFVHYDRQQNLPHEANRPLA 182
A AR HQ +D+ Q + ++ G P HP L G V Y ++ L
Sbjct: 737 ARLARAGHQPTIDKFTQMFNDFLEKGTPIHPDIRLATFG-VVARYGGKEGFD-----KLM 790
Query: 181 QLRELDDLEHRERQALL 131
LRE + ERQ ++
Sbjct: 791 NLRETTTFQEIERQTMV 807
>U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical
protein F45E4.4 protein.
Length = 2361
Score = 27.1 bits (57), Expect = 7.1
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 2 LCEFDRKYQLSIQFTVWDKIKDIENQSKQALTNLAQ 109
L F K S+ IK+++NQSKQ+L+ L Q
Sbjct: 381 LKNFFGKATQSVMHATDSVIKNVQNQSKQSLSGLTQ 416
>U39993-2|AAK72059.1| 744|Caenorhabditis elegans Hypothetical
protein F47E1.2 protein.
Length = 744
Score = 27.1 bits (57), Expect = 7.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 197 RFMRQVLLSIIMNEDVASSLEVFQRVARPPKL 292
R +S+I ED + +E +Q + RPPK+
Sbjct: 136 RMPHDTYMSLINLEDDTTPIEEYQPIGRPPKI 167
>AF045635-1|AAU87830.1| 480|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 76 protein.
Length = 480
Score = 27.1 bits (57), Expect = 7.1
Identities = 19/73 (26%), Positives = 32/73 (43%)
Frame = +1
Query: 16 QEISAIHTVHGVGQNKGHREPVETGANEFSAVPRSFNYGEGPGALGAQDHPVLGAEQAVG 195
Q++ A+ ++G GQ G+ + + +VP SF + P A P A +
Sbjct: 7 QKVLAMMKLNGAGQLTGYPFETPSSSTTTPSVPPSFPHSSNPNAYMKPSPP--SAISSPP 64
Query: 196 SLHAASSAVDHNE 234
S + SSA + E
Sbjct: 65 STSSCSSASEKKE 77
>Z81521-2|CAB04224.1| 514|Caenorhabditis elegans Hypothetical
protein F32A11.2 protein.
Length = 514
Score = 26.6 bits (56), Expect = 9.4
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -2
Query: 265 EHLERRGHVFVHYDRQQNLP-HEANRPLAQLRELDDLEHRERQ 140
EHLE++ + ++ LP H+A +P ++ E+ DLE E +
Sbjct: 458 EHLEKQYALDYKGRKKHRLPLHKAPKPSGKIIEVVDLEEEEEK 500
>Z48638-6|CAA88567.1| 541|Caenorhabditis elegans Hypothetical
protein ZK892.3 protein.
Length = 541
Score = 26.6 bits (56), Expect = 9.4
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 220 QQNLPHEANRPLAQLRELDDLEHRERQALLHN 125
Q++ EAN QL EL D+E+ E++A N
Sbjct: 246 QKHRIEEANEAREQLAELCDMEYEEKEAAAIN 277
>Z19152-2|CAA79544.1| 1150|Caenorhabditis elegans Hypothetical
protein B0464.2 protein.
Length = 1150
Score = 26.6 bits (56), Expect = 9.4
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = -2
Query: 310 ALPEHVQLGRPGHPLEHLERRGHVFVHYDRQQNLPHEANRPLAQLRELDD 161
+L HVQL P E ++ V Y +N +EA LAQL E D
Sbjct: 397 SLYAHVQLNDPAQTAEARQKGRDVLGKYLAVENDDYEACIDLAQLLEATD 446
>AF076840-1|AAC95522.1| 514|Caenorhabditis elegans Rad17-like
protein protein.
Length = 514
Score = 26.6 bits (56), Expect = 9.4
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -2
Query: 265 EHLERRGHVFVHYDRQQNLP-HEANRPLAQLRELDDLEHRERQ 140
EHLE++ + ++ LP H+A +P ++ E+ DLE E +
Sbjct: 458 EHLEKQYALDYKGRKKHRLPLHKAPKPSGKIIEVVDLEEEEEK 500
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,403,625
Number of Sequences: 27780
Number of extensions: 150523
Number of successful extensions: 628
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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