Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4b02
         (737 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|...    27   2.1  
SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos...    27   2.8  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    26   4.9  
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    26   6.4  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    25   8.5  

>SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 363 EEPVIRATYKNSTGKIVNVLYYGS 434
           EE V+R TY+ S   +  VLYY S
Sbjct: 268 EEAVVRETYEESGVDVEKVLYYAS 291


>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
           5-trisphosphate3-phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 441 VKNFYRSCDKDVAKYIFTRVNEDYILGINCSSE 539
           +   YR+ + DV KY+ T++ +++IL   C+ E
Sbjct: 46  IHKLYRNDELDVFKYLTTQLKDNWILLNLCAEE 78


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -2

Query: 652 SSTQSGLPSLPVIISIPSTILLTVDSEPKSLDNSTLRPSDEQLMP 518
           S TQS  P  P    +P+T    V+ EP S   S  RPS  + +P
Sbjct: 414 SQTQSSTPRKP----LPTTTSPKVNPEPHSESISDTRPSTPRKVP 454


>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -3

Query: 201 SLRCCNN*GIALHCSAIC 148
           SL C +N G++L+CS+ C
Sbjct: 201 SLSCLDNTGVSLNCSSSC 218


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -2

Query: 652 SSTQSGLPSLPVIISIPSTILLTVDSEPKSLDNSTLRPS 536
           SST   L S     S  S    T+DS P ++  STL+P+
Sbjct: 275 SSTPVSLTSSSTSSSGSSQDSTTIDSTPSTIATSTLQPT 313


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,763,973
Number of Sequences: 5004
Number of extensions: 54275
Number of successful extensions: 160
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)