Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4b02
(737 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32548| Best HMM Match : Myosin_head (HMM E-Value=2.9e-17) 33 0.24
SB_44205| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_37998| Best HMM Match : zf-FPG_IleRS (HMM E-Value=3.3) 30 2.3
SB_4281| Best HMM Match : Cornifin (HMM E-Value=0.78) 29 3.0
SB_40699| Best HMM Match : HSA (HMM E-Value=3.4) 29 3.9
SB_11292| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_2078| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_56666| Best HMM Match : Toxin_R_bind_N (HMM E-Value=2.5) 28 6.9
SB_5169| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_51205| Best HMM Match : RVT_1 (HMM E-Value=1.7e-21) 28 9.1
SB_31243| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_28930| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_18254| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_2424| Best HMM Match : RVT_1 (HMM E-Value=6.2e-18) 28 9.1
SB_50448| Best HMM Match : RVT_1 (HMM E-Value=3.7) 28 9.1
>SB_32548| Best HMM Match : Myosin_head (HMM E-Value=2.9e-17)
Length = 546
Score = 33.1 bits (72), Expect = 0.24
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = +2
Query: 437 FGEELLQVLRQGRR*VHIHQGQRGLHSGHQLLVGGAQRAVVQALRLAVD 583
FG +L L + R VH +G+R H +QLL GA+ +++AL L D
Sbjct: 146 FGGHILNYLLEKSRVVHQAKGERNFHIFYQLL-QGAEHELLEALELERD 193
>SB_44205| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 611
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +1
Query: 334 TAARTSASLQRSRSSGPRTRTAPAKS*TSCTMGAIR*RTSTGPATRTSLSTYSPGSTR 507
T A TSA+ + S+ T+ S + + T T P TR + STY+ +TR
Sbjct: 132 TIANTSANTSANTSANTSANTSANTSANTSANTSTDTSTDTSPDTRANTSTYTSANTR 189
>SB_37998| Best HMM Match : zf-FPG_IleRS (HMM E-Value=3.3)
Length = 233
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +3
Query: 249 WPPNQRTRNACEVQTFKKLDTYEIETARNGCSNLSLPSEE 368
WP + R AC+V+ F+K T E ET N + LS PS +
Sbjct: 194 WPYDHCLRTACKVEQFEK--TVEKETKCNDKTLLSPPSSK 231
>SB_4281| Best HMM Match : Cornifin (HMM E-Value=0.78)
Length = 389
Score = 29.5 bits (63), Expect = 3.0
Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 5/102 (4%)
Frame = +1
Query: 223 RDKCTRSITGPRIRERGTPAKYKPSRNSIHTK*KPLGTAARTSASLQRSRSSGPRTRTAP 402
RD+ T S P R+R T + +P R+ T G T+++ + + P
Sbjct: 155 RDRTTTSTDEPG-RDRTTTSTDEPGRDRTTTSTDEPGRDRTTTSTDEPGHDRTTTSTDEP 213
Query: 403 AKS*TSCTM---GAIR*RTSTGPA--TRTSLSTYSPGSTRIT 513
+ T+ + G R TST RT+ ST PG RIT
Sbjct: 214 GRDRTTTSTDEPGCDRTTTSTDEPGRDRTTTSTNEPGRNRIT 255
>SB_40699| Best HMM Match : HSA (HMM E-Value=3.4)
Length = 221
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -1
Query: 188 VITKALRFTAPRYATINRAEKRSDYQKEHHSFH 90
V+T A R ATI + ++ SD QK +HS+H
Sbjct: 33 VVTIATRRYKHYDATIRQIKRHSDDQKNYHSYH 65
>SB_11292| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1529
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = -1
Query: 689 KQIAFDIDPVL-MFEHTIRASLSSGHNIYTVHDPFDSRQRA*ELGQQHAAPLRRAID 522
K++ F I +++H ++ LSS Y +HD R E +H A LR+ +D
Sbjct: 963 KRLMFGISSATELYQHIVQQVLSSCEGTYNIHDDIIVHGRTVE---EHHARLRKTLD 1016
>SB_2078| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 171
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = -1
Query: 251 PVIDRVHLSR*RIQIKVLFVVVITKALRFTAPRYATINRAEKRSDYQKEHHSFHVIR 81
PV+ +H R ++K +++ KAL+ APRY N A K + V R
Sbjct: 115 PVLRNLHWLPVRYRVKFKILLITFKALQGLAPRYIIKNNARYSLRSNKRRKNDEVFR 171
>SB_56666| Best HMM Match : Toxin_R_bind_N (HMM E-Value=2.5)
Length = 174
Score = 28.3 bits (60), Expect = 6.9
Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 5/99 (5%)
Frame = +3
Query: 258 NQRTRNAC--EVQTFKKLDTYEIETAR--NGCSNLSLPSEEPVIRATYKNSTGKIVNVLY 425
N R +NAC + + Y+ R N S + E + Y+N T + +
Sbjct: 38 NCRQKNACLLDGNCLQSSVIYQATVTRKDNNTSETYVGLTENEFKTRYRNHTVSFRHAKH 97
Query: 426 YGSDSVKNFYRSC-DKDVAKYIFTRVNEDYILGINCSSE 539
S + + S D D+ +I ++ + INCSS+
Sbjct: 98 RNSTELSKYIWSLKDNDIEHFISWKILSSHSTYINCSSK 136
>SB_5169| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 345
Score = 28.3 bits (60), Expect = 6.9
Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 5/99 (5%)
Frame = +3
Query: 258 NQRTRNAC--EVQTFKKLDTYEIETAR--NGCSNLSLPSEEPVIRATYKNSTGKIVNVLY 425
N R +NAC + + Y+ R N S + E + Y+N T + +
Sbjct: 209 NCRQKNACLLDGNCLQSSVIYQATVTRKDNNTSETYVGLTENEFKTRYRNHTVSFRHAKH 268
Query: 426 YGSDSVKNFYRSC-DKDVAKYIFTRVNEDYILGINCSSE 539
S + + S D D+ +I ++ + INCSS+
Sbjct: 269 RNSTELSKYIWSLKDNDIEHFISWKILSSHSTYINCSSK 307
>SB_51205| Best HMM Match : RVT_1 (HMM E-Value=1.7e-21)
Length = 387
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = -1
Query: 689 KQIAFDIDPVL-MFEHTIRASLSSGHNIYTVHDPFDSRQRA*ELGQQHAAPLRRAID 522
KQ+ F I +++H ++ LSS Y +HD R ++H A LR+ +D
Sbjct: 136 KQLMFGISSAPDLYQHIVQQVLSSCEAAYNIHDDIIVHGRT---VKEHDARLRKTLD 189
>SB_31243| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 317
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -1
Query: 251 PVIDRVHLSR*RIQIKVLFVVVITKALRFTAPRYAT 144
PV+ +H R ++K +++ KAL+ APRY T
Sbjct: 205 PVLRNLHWLPVRYRVKFKILLITFKALQGLAPRYIT 240
>SB_28930| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 727
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = -1
Query: 689 KQIAFDIDPV-LMFEHTIRASLSSGHNIYTVHDPFDSRQRA*ELGQQHAAPLRRAID 522
K++ F I +++H ++ LSS Y +HD R E +H A LR+ +D
Sbjct: 206 KRLMFGISSAPKLYQHIVQQVLSSCQGDYNIHDDIIVHGRTVE---EHDARLRKTLD 259
>SB_18254| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 353
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Frame = +1
Query: 166 KRNALVITTTKRTLIWIRYRDKCTRSITGPRIRERGTPAKYKPSRNSIHTK*KPLGTAAR 345
K N+ V + L+W + K T++ +RE+ K S N + + K T +
Sbjct: 66 KNNSTVTKASNNHLVWEKNNSKVTKASNNRLVREKNNSTVTKASNNRL-VREKNNSTVTK 124
Query: 346 TSAS-LQRSRSSGPRTRTA 399
S + L R +++ T+ +
Sbjct: 125 ASNNRLVREKNNSTVTKAS 143
>SB_2424| Best HMM Match : RVT_1 (HMM E-Value=6.2e-18)
Length = 657
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -1
Query: 251 PVIDRVHLSR*RIQIKVLFVVVITKALRFTAPRYAT 144
PV+ +H R ++K +++ KAL+ APRY T
Sbjct: 545 PVLRNLHWLPVRYRVKFKILLITFKALQGLAPRYIT 580
>SB_50448| Best HMM Match : RVT_1 (HMM E-Value=3.7)
Length = 390
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -1
Query: 251 PVIDRVHLSR*RIQIKVLFVVVITKALRFTAPRYAT 144
PV+ +H R ++K +++ KAL+ APRY T
Sbjct: 278 PVLRNLHWLPVRYRVKFKILLITFKALQGLAPRYIT 313
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,955,838
Number of Sequences: 59808
Number of extensions: 413673
Number of successful extensions: 1500
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1499
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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