Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4b01
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    28   1.5  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   1.9  
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    27   3.4  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    27   3.4  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    26   5.9  
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    26   5.9  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    25   7.9  

>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 23/78 (29%), Positives = 34/78 (43%)
 Frame = +1

Query: 184 VSGVLSSSQCTVKDSQT*RRTMWPPSPTTRKALRSSNT*RSLKRPCKPTRTT*SRKSAGS 363
           +S  +SSS   V+       T    +  T  +  ++NT   + R  KPT TT S   A +
Sbjct: 307 ISSTISSSSFIVESPSVALSTS-STTTITNASTPAANT--IISRSSKPTDTTNSISFANT 363

Query: 364 TVSRSETVQTAPRVTGSS 417
           T   + T  T+P    SS
Sbjct: 364 TPENTSTQITSPTAVNSS 381


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 25/100 (25%), Positives = 40/100 (40%)
 Frame = +1

Query: 199 SSSQCTVKDSQT*RRTMWPPSPTTRKALRSSNT*RSLKRPCKPTRTT*SRKSAGSTVSRS 378
           +S+ CT   S     +    +P T     +S +  S+  P   T +T +  S   T S S
Sbjct: 225 TSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTS 284

Query: 379 ETVQTAPRVTGSSMRKKAKGKSPTTALKNPT*PSRSATKT 498
            T  T+   TG+S         PT+     T P  ++T +
Sbjct: 285 CTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSS 324


>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
 Frame = +3

Query: 351 VRGIYGFKVRNGPDGAEGYWVINAKEGKGKVTYNGSEKPDVTFTISDEDVADLISGKLNP 530
           V+  YG          EG+  +  KEG  +++ +   + +      D     L++  +  
Sbjct: 580 VKNTYGLNFTINLKAVEGFRTVELKEGGSELSVDNENRKEYVLRYVDY----LLNTTVKK 635

Query: 531 Q-KAFFQGKIKIQGNMGLAM 587
           Q  AFF G +K+ G   +++
Sbjct: 636 QFSAFFDGFMKVCGGNAISL 655


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 19/66 (28%), Positives = 31/66 (46%)
 Frame = +3

Query: 51  SLSAVSVTQGVDYTTSGSIRIQSSGSPVVYREVPRARIALQHNLGLGGAVVITMYRKGFS 230
           S+S V V+ G  + T  S++        + REVP+    +  + G  G+ V+ +  K F 
Sbjct: 596 SVSNVRVSGG-SFKTFVSVKGAPEVIATMLREVPKDYEKIYKDYGRKGSRVLALGYKYFK 654

Query: 231 NVTPNN 248
           N  P N
Sbjct: 655 NYIPEN 660


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 36  YLEILSLSAVSVTQGVDYTTSGSIRIQSSGSPVVYREV 149
           Y+E  S+SA + T  + Y+ S +  +  S  PVV   V
Sbjct: 741 YIETPSVSATTTTTTIGYSGSLTTTLTGSSGPVVTNTV 778


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = +3

Query: 267 NPEGFKVFKYMKILEEAMQTDQDNLIEKVRGIYGFKVRNGPDGAEG 404
           NP G K FK + +  E +   Q   +    GI        P GAEG
Sbjct: 38  NPNGEKKFKEISLAYEVLSDPQRRKLYDQYGITEGNAAPPPPGAEG 83


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 421 RKKAKGKSPTTALKNPT*PSRSATKTWPIL 510
           R+K  G S TTA   P  PS+ +++  P+L
Sbjct: 232 RRKDSGSSKTTATYIPHNPSKKSSQHLPLL 261


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,714,069
Number of Sequences: 5004
Number of extensions: 54986
Number of successful extensions: 153
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)