Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4a14
         (709 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.53 
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    25   0.93 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   1.6  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    23   2.8  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    23   2.8  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   5.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.7  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 23/89 (25%), Positives = 39/89 (43%)
 Frame = +3

Query: 234  RQVDDQLQMALQQLKTSREQCQQLLKEREDNEVETLQVIKKNTMLKGQLSQLSIEYNEVL 413
            +Q   Q Q   QQ +  + Q QQ  ++++  + +  Q  K+   + G + QL   YN   
Sbjct: 1511 QQQQQQPQQQSQQPQQQQPQPQQQQQQQQQQQPQQQQ--KEYGAVSGLVVQLQRGYNSGN 1568

Query: 414  ETNKKLQNVVDGFDQCSGEYVESLQLSAE 500
              + +  N      Q SGE V  ++ S E
Sbjct: 1569 NRSGEQANSQQQQQQQSGEPVIGMEDSVE 1597


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 393 IEYNEVLETNKKLQNVVDGFD 455
           +EY  VL  + ++Q V+ GFD
Sbjct: 371 LEYEYVLAVSNRIQKVIYGFD 391


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +3

Query: 489 LSAELKVKLSQAHDCISNLQLEITNLKAQKTQSLYSELIESEP 617
           L+ ++K+KLSQ  D     Q+  TNL  +  QS Y   ++ +P
Sbjct: 50  LTVKIKLKLSQLIDVNLKNQIMTTNLWVE--QSWYDYKLKWDP 90


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 20/71 (28%), Positives = 31/71 (43%)
 Frame = +3

Query: 228 KARQVDDQLQMALQQLKTSREQCQQLLKEREDNEVETLQVIKKNTMLKGQLSQLSIEYNE 407
           ++R  D+QL MAL   +  R Q +  L E   + V          +L+G   Q S E  E
Sbjct: 30  RSRVSDEQLNMALSDQRYLRRQLKCALGEAPCDPVGRRLKSLAPLVLRGACPQCSPE--E 87

Query: 408 VLETNKKLQNV 440
             +  K L ++
Sbjct: 88  TRQIKKVLSHI 98


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 20/71 (28%), Positives = 31/71 (43%)
 Frame = +3

Query: 228 KARQVDDQLQMALQQLKTSREQCQQLLKEREDNEVETLQVIKKNTMLKGQLSQLSIEYNE 407
           ++R  D+QL MAL   +  R Q +  L E   + V          +L+G   Q S E  E
Sbjct: 30  RSRVSDEQLNMALSDQRYLRRQLKCALGEAPCDPVGRRLKSLAPLVLRGACPQCSPE--E 87

Query: 408 VLETNKKLQNV 440
             +  K L ++
Sbjct: 88  TRQIKKVLSHI 98


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +1

Query: 250 NFKWLFNN*KHHGNSVNN 303
           N+K+ +NN  ++ N+ NN
Sbjct: 328 NYKYNYNNNNYNNNNYNN 345


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 11/41 (26%), Positives = 17/41 (41%)
 Frame = -1

Query: 700 ECVLSESPPVKSIVGMSHSEVVITVPEAGSLSISSEYRLCV 578
           E      PPV ++ G     +  +  E G  S +S  R C+
Sbjct: 552 ERFFKSKPPVATMYGSDEEIINSSNDEGGKTSPNSAVRKCM 592


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,531
Number of Sequences: 438
Number of extensions: 4120
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)