Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4a13
         (539 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82056-5|CAB04856.1|  378|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z81129-9|CAB03410.1|  378|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AF022969-2|AAB69893.2|  354|Caenorhabditis elegans Hypothetical ...    28   4.9  

>Z82056-5|CAB04856.1|  378|Caenorhabditis elegans Hypothetical
           protein T26H5.5 protein.
          Length = 378

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 17/62 (27%), Positives = 32/62 (51%)
 Frame = -1

Query: 401 GQETSFYILVFNVLYVLSTLYLLFEVAFMQAQCIFVSERNNQLST*KSKFVNFNSHKTIN 222
           G E   Y+++ ++L  +STL L+F++   + +   +   +N      +K V F    TI+
Sbjct: 227 GMEGVLYVIIPSILLPISTLILIFQLRISRKKSEALRHTSNSGGDRTTKLVTF---MTIS 283

Query: 221 FT 216
           FT
Sbjct: 284 FT 285


>Z81129-9|CAB03410.1|  378|Caenorhabditis elegans Hypothetical
           protein T26H5.5 protein.
          Length = 378

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 17/62 (27%), Positives = 32/62 (51%)
 Frame = -1

Query: 401 GQETSFYILVFNVLYVLSTLYLLFEVAFMQAQCIFVSERNNQLST*KSKFVNFNSHKTIN 222
           G E   Y+++ ++L  +STL L+F++   + +   +   +N      +K V F    TI+
Sbjct: 227 GMEGVLYVIIPSILLPISTLILIFQLRISRKKSEALRHTSNSGGDRTTKLVTF---MTIS 283

Query: 221 FT 216
           FT
Sbjct: 284 FT 285


>AF022969-2|AAB69893.2|  354|Caenorhabditis elegans Hypothetical
           protein C29G2.4 protein.
          Length = 354

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -2

Query: 517 LLIPY*NIVQNLLKKTCKVAIYFHLCNFIFIVF 419
           + + Y  +V N L       +YFHLC ++   F
Sbjct: 196 IYLNYTTVVNNTLSTVLTTGMYFHLCYYLIFKF 228


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,256,281
Number of Sequences: 27780
Number of extensions: 215389
Number of successful extensions: 539
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)