Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4a13
         (539 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   2.6  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     23   2.6  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   3.5  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   4.6  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   6.1  

>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -2

Query: 322 PLCKPNVYSFPKETTNYL 269
           P+C P ++ F  +T+N+L
Sbjct: 149 PVCAPKLHVFDLKTSNHL 166


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 518 FIDTILKYSPKFIKKNLQ 465
           F+ TIL+  PKFI  + Q
Sbjct: 33  FLSTILRLDPKFIALHCQ 50


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 167 ITYYLQLQHTNHT 205
           I YYL L++T+HT
Sbjct: 288 IDYYLVLENTDHT 300


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 11/42 (26%), Positives = 18/42 (42%)
 Frame = +1

Query: 40  FVCENLPHFTFVI*TKAISLCSYQRKILLLHSNKNNLRIVLS 165
           FVC+++   + +   K    C Y R I+    N   +   LS
Sbjct: 26  FVCKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLS 67


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +1

Query: 109 QRKILLLHSNKNNLRIVLSDHVLFTITTH 195
           ++  +L+H+    L+  +SD+ + T  TH
Sbjct: 430 KKSSVLVHTKNGRLKYQISDNDISTNETH 458


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,896
Number of Sequences: 438
Number of extensions: 3031
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)