Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4a09
         (737 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5VMQ4 Cluster: Putative diguanylate phosphodiesterase;...    34   4.2  
UniRef50_Q4S512 Cluster: Chromosome 6 SCAF14737, whole genome sh...    33   5.5  

>UniRef50_A5VMQ4 Cluster: Putative diguanylate phosphodiesterase;
           n=2; Lactobacillus reuteri|Rep: Putative diguanylate
           phosphodiesterase - Lactobacillus reuteri F275
          Length = 275

 Score = 33.9 bits (74), Expect = 4.2
 Identities = 13/41 (31%), Positives = 26/41 (63%)
 Frame = -1

Query: 350 YERTELSTLFLRIECPTTKTIFKHIRICEKTYNILQKYIFY 228
           ++R E+  +F +++ P  K   +++   +KTYN+LQ+Y  Y
Sbjct: 153 FKRKEILHMFKKLQHPQIKITIENVDSSKKTYNLLQQYFPY 193


>UniRef50_Q4S512 Cluster: Chromosome 6 SCAF14737, whole genome
           shotgun sequence; n=5; Clupeocephala|Rep: Chromosome 6
           SCAF14737, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 343

 Score = 33.5 bits (73), Expect = 5.5
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = +2

Query: 467 FNIYKYIYLVMALYIISWSPITHYVQDRLNGRTAPRRR*SYVLIWQLEFL 616
           FN+Y  ++ +MAL I  +  I H VQ R   RT    R + V+IW   F+
Sbjct: 99  FNLYTSVFFLMALSIDRYLAIVHPVQSR-RFRTVVYARVTCVVIWLFAFV 147


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 636,903,835
Number of Sequences: 1657284
Number of extensions: 12678210
Number of successful extensions: 21884
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21863
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60088620670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)