Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4a09
         (737 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0609 + 4404287-4405023,4405496-4405631,4405724-4405876,440...    29   2.9  
02_05_1074 - 33904518-33904697,33904886-33904985,33905085-339053...    28   8.9  

>06_01_0609 +
           4404287-4405023,4405496-4405631,4405724-4405876,
           4405985-4406128,4406224-4406375,4406453-4406552,
           4406653-4406775,4406876-4407037,4407190-4407247,
           4407324-4407502,4408294-4408402,4408567-4408637,
           4408891-4408986,4409727-4409803,4410983-4411066,
           4411473-4411607,4411744-4411819,4413072-4413167,
           4413580-4413671,4413745-4413868,4413966-4414052
          Length = 996

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 470 NIYKYIYLVMALYIISWSPITHYVQDRLNGRT 565
           NIYK IY  ++ + + W    HY+ +  +G T
Sbjct: 512 NIYKVIYEQLSGHRVGWKKALHYLTEHFSGGT 543


>02_05_1074 -
           33904518-33904697,33904886-33904985,33905085-33905311,
           33905511-33908384,33908467-33908643,33908786-33909008,
           33909727-33909806,33910657-33910817,33910892-33910937,
           33911129-33911251,33911730-33911804,33911920-33912120
          Length = 1488

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +2

Query: 521 SPITHYVQDRLNGRTAPRRR*SYVLIWQLEFL*ENTWTFRRKHINDFAGICHAF 682
           SP+    QD +NG+ A  R+  Y ++ +L    + T   RR  + D   +C+ F
Sbjct: 685 SPVKRQ-QDSINGQLARLRKSIYEIVQELVMGQKQTPNVRRALLQDIGYLCYFF 737


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,920,644
Number of Sequences: 37544
Number of extensions: 301305
Number of successful extensions: 406
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)