Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4a09
         (737 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    24   1.7  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    24   1.7  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    24   1.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   6.9  

>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -3

Query: 303 YHQNNL*TYTYL*KNIQYFAKIYFLLN 223
           Y+ NN   Y Y   N   + K+Y+ +N
Sbjct: 96  YNNNNYNNYNYNNNNYNNYKKLYYNIN 122


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = -1

Query: 617 TKIPVAILKHNFTYAAALCGH*DGLVHNELSDSN*LCIRPLLN 489
           TK+      H +    +LCG  +  + NEL  S     RP+ N
Sbjct: 33  TKLQPTYFHHTYIIYESLCGRHEKRLLNELLSSYNTLERPVAN 75


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = -1

Query: 617 TKIPVAILKHNFTYAAALCGH*DGLVHNELSDSN*LCIRPLLN 489
           TK+      H +    +LCG  +  + NEL  S     RP+ N
Sbjct: 33  TKLQPTYFHHTYIIYESLCGRHEKRLLNELLSSYNTLERPVAN 75


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +1

Query: 232 KIYFCKILYVFSQIRICLKIVLVVGH 309
           ++YF  +  VF +I   + ++L++GH
Sbjct: 234 EVYFLNMASVFMRIFNLICMMLLIGH 259


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,072
Number of Sequences: 438
Number of extensions: 4390
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)