Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4a05
(724 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26; B... 289 5e-77
UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181; ... 250 3e-65
UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30; P... 248 8e-65
UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861; ... 244 2e-63
UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941; ... 241 9e-63
UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498... 241 2e-62
UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;... 227 2e-58
UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI... 225 9e-58
UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179; ... 220 2e-56
UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126; ... 220 3e-56
UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;... 210 3e-53
UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106; ... 208 1e-52
UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI... 207 2e-52
UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alp... 202 7e-51
UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa group|... 197 2e-49
UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2 pol... 197 3e-49
UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1; Peri... 193 3e-48
UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4 pre... 190 4e-47
UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455; ... 189 5e-47
UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825; ... 188 9e-47
UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1; Na... 184 1e-45
UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein; ... 184 2e-45
UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15; F... 177 2e-43
UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida stellata|... 177 2e-43
UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida stellata|... 177 2e-43
UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa gro... 173 4e-42
UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3; Alphaproteob... 169 8e-41
UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|R... 165 1e-39
UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|R... 159 6e-38
UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42; N... 152 7e-36
UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5; Na... 152 1e-35
UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular or... 146 5e-34
UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9; Co... 146 6e-34
UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI... 145 1e-33
UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7; Eu... 143 5e-33
UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1; Di... 126 6e-28
UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517; ... 122 1e-26
UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388; ... 115 1e-24
UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107; ... 115 1e-24
UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Eugl... 110 4e-23
UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase, sub... 109 5e-23
UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3; Th... 109 9e-23
UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1; Wa... 104 2e-21
UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;... 104 3e-21
UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2; Cystobacteri... 101 1e-20
UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4... 101 2e-20
UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16; c... 100 4e-20
UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1; M... 99 5e-20
UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93; A... 99 5e-20
UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=... 98 2e-19
UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2; Roseiflexus|... 98 2e-19
UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16; B... 97 5e-19
UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9.... 97 5e-19
UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1; Ap... 96 9e-19
UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI... 96 9e-19
UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3; Bacteria|... 95 1e-18
UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol oxid... 95 2e-18
UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=... 93 6e-18
UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia polym... 92 1e-17
UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1; Aq... 89 8e-17
UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2; Rh... 87 3e-16
UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-) ... 85 2e-15
UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9.... 85 2e-15
UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia lipolyti... 83 5e-15
UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=... 83 5e-15
UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobac... 83 7e-15
UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III ... 83 7e-15
UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15; Proteob... 82 1e-14
UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacil... 82 2e-14
UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30; Proteobacte... 81 4e-14
UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1; Kluyver... 79 1e-13
UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit... 79 1e-13
UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1; Bl... 78 2e-13
UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5; Sulfol... 77 4e-13
UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3.... 75 2e-12
UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase polype... 74 3e-12
UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2; D... 74 4e-12
UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3; Ha... 74 4e-12
UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subuni... 73 7e-12
UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5; P... 73 1e-11
UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17; B... 72 1e-11
UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1; Mu... 71 3e-11
UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;... 70 7e-11
UniRef50_A4WT83 Cluster: Cytochrome c, monohaem; n=3; Rhodobacte... 68 3e-10
UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Ae... 67 4e-10
UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit ... 66 8e-10
UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3; Proteobacter... 66 1e-09
UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48; O... 66 1e-09
UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1; Pl... 64 3e-09
UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2; Acidobacteri... 64 4e-09
UniRef50_Q9B6E2 Cluster: Cytochrome c oxidase subunit I; n=2; Ya... 61 2e-08
UniRef50_Q85HI4 Cluster: Cytochrome c oxidase subunit I; n=7; Ec... 60 4e-08
UniRef50_Q5P1W4 Cluster: Cytochrome c oxidase, subunit I; n=13; ... 60 5e-08
UniRef50_Q35062 Cluster: CoxI intron2 ORF; n=2; Marchantia polym... 60 7e-08
UniRef50_P03876 Cluster: Putative COX1/OXI3 intron 2 protein; n=... 60 7e-08
UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1; My... 59 9e-08
UniRef50_Q0R4Y4 Cluster: Maturase-like protein; n=2; Eukaryota|R... 57 5e-07
UniRef50_P03877 Cluster: Intron-encoded DNA endonuclease aI3 pre... 55 2e-06
UniRef50_O99652 Cluster: Cytochrome c oxidase subunit I; n=1; Te... 54 4e-06
UniRef50_Q2N1P8 Cluster: Cytochrome c oxidase subunit I; n=2; Eu... 54 5e-06
UniRef50_A5FXH8 Cluster: Cytochrome-c oxidase; n=1; Acidiphilium... 53 6e-06
UniRef50_P03875 Cluster: Putative COX1/OXI3 intron 1 protein; n=... 53 8e-06
UniRef50_Q7YI87 Cluster: Cytochrome oxidase subunit I; n=1; Cela... 48 2e-04
UniRef50_Q6XYE8 Cluster: Cytochrome c oxidase subunit I; n=2; En... 41 0.027
UniRef50_Q8II85 Cluster: Putative uncharacterized protein; n=2; ... 33 9.4
UniRef50_Q2ABI9 Cluster: NADH-ubiquinone oxidoreductase chain 2;... 33 9.4
UniRef50_Q5ABE2 Cluster: Putative uncharacterized protein CLN3; ... 33 9.4
>UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26;
Bilateria|Rep: Cytochrome c oxidase subunit I - Samia
cynthia ricini (Indian eri silkmoth)
Length = 510
Score = 289 bits (709), Expect = 5e-77
Identities = 152/240 (63%), Positives = 161/240 (67%)
Frame = +2
Query: 2 RKXIYSTNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGSLIGDDQIYDTIVTAHAX 181
RK +YSTNHKDIGTLYFIFGI + + GTSL LLIRAELG PGSLIGDDQIY+TIVTAHA
Sbjct: 1 RKWLYSTNHKDIGTLYFIFGIWAGMVGTSLSLLIRAELGTPGSLIGDDQIYNTIVTAHAF 60
Query: 182 XXXXXXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENGAG 361
N LVPL GAP AFPR + F IVENGAG
Sbjct: 61 IMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPRMNNMSFWLLPPSLTLLISSSIVENGAG 120
Query: 362 TG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPL 541
TG TVYPPLSSNIAH G SVDLAIFSLHLAGISS SFDQ+PL
Sbjct: 121 TGWTVYPPLSSNIAHGGSSVDLAIFSLHLAGISSILGAINFITTIINMRMNNLSFDQMPL 180
Query: 542 FV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEV 721
FV AVGITAF AGAIT+LLTDRNLNTSFFDPAGGGDPILYQHLF FFGHP++
Sbjct: 181 FVWAVGITAFLLLLSLPVLAGAITMLLTDRNLNTSFFDPAGGGDPILYQHLFWFFGHPKL 240
>UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181;
Coelomata|Rep: Cytochrome c oxidase subunit I - Piculus
rubiginosus
Length = 504
Score = 250 bits (612), Expect = 3e-65
Identities = 134/240 (55%), Positives = 149/240 (62%)
Frame = +2
Query: 5 KXIYSTNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGSLIGDDQIYDTIVTAHAXX 184
+ ++STNHKDIGTLY IFG + + GT+L LLIRAELG PG+L+GDDQIY+ IVTAHA
Sbjct: 6 RWLFSTNHKDIGTLYLIFGAWAGMIGTALSLLIRAELGQPGTLLGDDQIYNVIVTAHAFV 65
Query: 185 XXXXXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENGAGT 364
N LVPL GAP AFPR + F VE GAGT
Sbjct: 66 MIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLXPPSFLLLLASSTVEAGAGT 125
Query: 365 G*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 544
G TVYPPL+ N+AH G SVDLAIFSLHLAGISS S Q PLF
Sbjct: 126 GWTVYPPLAGNLAHAGASVDLAIFSLHLAGISSILGAINFITTAINMKPPAISQYQTPLF 185
Query: 545 V*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVY 724
V +V ITA A IT+LLTDRNLNT+FFDPAGGGDPILYQHLF FFGHPEVY
Sbjct: 186 VWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVY 245
>UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30;
Panarthropoda|Rep: Cytochrome c oxidase subunit I -
Pagyris cymothoe
Length = 487
Score = 248 bits (608), Expect = 8e-65
Identities = 132/215 (61%), Positives = 138/215 (64%)
Frame = +2
Query: 80 GTSLRLLIRAELGNPGSLIGDDQIYDTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLXXGA 259
GTSL LLIR ELG PGSLIGDDQIY+TIVTAHA N L+PL GA
Sbjct: 3 GTSLSLLIRTELGTPGSLIGDDQIYNTIVTAHAFIMIFFMVMPIMIGGFGNWLIPLMLGA 62
Query: 260 PXXAFPRXXXIXFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFS 439
P AFPR + F IVENGAGTG TVYPPLSSNIAH G SVDLAIFS
Sbjct: 63 PDMAFPRMNNMSFWLLPPSLILLISSSIVENGAGTGWTVYPPLSSNIAHGGSSVDLAIFS 122
Query: 440 LHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITIL 619
LHLAGISS SFDQ+PLF+ AVGITA AGAIT+L
Sbjct: 123 LHLAGISSILGAINFITTIINMRINKMSFDQMPLFIWAVGITALLLLLSLPVLAGAITML 182
Query: 620 LTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVY 724
LTDRNLNTSFFDPAGGGDPILYQHLF FFGHPEVY
Sbjct: 183 LTDRNLNTSFFDPAGGGDPILYQHLFWFFGHPEVY 217
>UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861;
root|Rep: Cytochrome c oxidase subunit 1 - Danio rerio
(Zebrafish) (Brachydanio rerio)
Length = 516
Score = 244 bits (597), Expect = 2e-63
Identities = 129/240 (53%), Positives = 145/240 (60%)
Frame = +2
Query: 5 KXIYSTNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGSLIGDDQIYDTIVTAHAXX 184
+ +STNHKDIGTLY +FG + + GT+L LLIRAEL PG+L+GDDQIY+ IVTAHA
Sbjct: 5 RWFFSTNHKDIGTLYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFV 64
Query: 185 XXXXXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENGAGT 364
N LVPL GAP AFPR + F VE GAGT
Sbjct: 65 MIFFMVMPILIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGT 124
Query: 365 G*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 544
G TVYPPL+ N+AH G SVDL IFSLHLAG+SS S Q PLF
Sbjct: 125 GWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTTINMKPPTISQYQTPLF 184
Query: 545 V*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVY 724
V AV +TA A IT+LLTDRNLNT+FFDPAGGGDPILYQHLF FFGHPEVY
Sbjct: 185 VWAVLVTAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVY 244
>UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941;
Eukaryota|Rep: Cytochrome c oxidase subunit I -
Ophisurus macrorhynchos
Length = 546
Score = 241 bits (591), Expect = 9e-63
Identities = 127/240 (52%), Positives = 145/240 (60%)
Frame = +2
Query: 5 KXIYSTNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGSLIGDDQIYDTIVTAHAXX 184
+ +STNHKDIGTLY +FG + + GT+L LLIRAEL PG+L+GDDQIY+ IVTAHA
Sbjct: 5 RWFFSTNHKDIGTLYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFV 64
Query: 185 XXXXXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENGAGT 364
N LVPL GAP AFPR + F VE GAGT
Sbjct: 65 MIFFMVMPVMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGT 124
Query: 365 G*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 544
G TVYPPL+ N+AH G SVDL IFSLHLAG+SS + Q PLF
Sbjct: 125 GWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAITQYQTPLF 184
Query: 545 V*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVY 724
V +V +TA A IT+LLTDRNLNT+FFDPAGGGDPILYQHLF FFGHPEVY
Sbjct: 185 VWSVLVTAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVY 244
>UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498;
root|Rep: Cytochrome c oxidase subunit 1 - Homo sapiens
(Human)
Length = 513
Score = 241 bits (589), Expect = 2e-62
Identities = 126/240 (52%), Positives = 146/240 (60%)
Frame = +2
Query: 5 KXIYSTNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGSLIGDDQIYDTIVTAHAXX 184
+ ++STNHKDIGTLY +FG + + GT+L LLIRAELG PG+L+G+D IY+ IVTAHA
Sbjct: 5 RWLFSTNHKDIGTLYLLFGAWAGVLGTALSLLIRAELGQPGNLLGNDHIYNVIVTAHAFV 64
Query: 185 XXXXXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENGAGT 364
N LVPL GAP AFPR + F +VE GAGT
Sbjct: 65 MIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSLLLLLASAMVEAGAGT 124
Query: 365 G*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 544
G TVYPPL+ N +H G SVDL IFSLHLAG+SS + Q PLF
Sbjct: 125 GWTVYPPLAGNYSHPGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMTQYQTPLF 184
Query: 545 V*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVY 724
V +V ITA A IT+LLTDRNLNT+FFDPAGGGDPILYQHLF FFGHPEVY
Sbjct: 185 VWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVY 244
>UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;
cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 527
Score = 227 bits (556), Expect = 2e-58
Identities = 119/242 (49%), Positives = 143/242 (59%), Gaps = 2/242 (0%)
Frame = +2
Query: 5 KXIYSTNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGSLI--GDDQIYDTIVTAHA 178
+ ++STNHKDIGTLYFIFG + + GT +LIR EL PG I G+ Q+Y+ ++TAHA
Sbjct: 6 RWLFSTNHKDIGTLYFIFGAIAGVMGTCFSVLIRMELARPGDQILGGNHQLYNVLITAHA 65
Query: 179 XXXXXXXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENGA 358
N VP+ GAP AFPR I F +VE G+
Sbjct: 66 FLMIFFMVMPAMIGGFGNWFVPILIGAPDMAFPRLNNISFWLLPPSLLLLLSSALVEVGS 125
Query: 359 GTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLP 538
GTG TVYPPLS +H G +VDLAIFSLHL+G+SS + +LP
Sbjct: 126 GTGWTVYPPLSGITSHSGGAVDLAIFSLHLSGVSSILGSINFITTIFNMRGPGMTMHRLP 185
Query: 539 LFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPE 718
LFV +V +TAF AGAIT+LLTDRN NT+FFDPAGGGDPILYQHLF FFGHPE
Sbjct: 186 LFVWSVLVTAFLLLLSLPVLAGAITMLLTDRNFNTTFFDPAGGGDPILYQHLFWFFGHPE 245
Query: 719 VY 724
VY
Sbjct: 246 VY 247
>UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI8
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI8 (EC
3.1.-.-)]; n=103; Eukaryota|Rep: Probable intron-encoded
endonuclease aI8 precursor [Contains: Truncated
non-functional cytochrome oxidase 1; Intron-encoded
endonuclease aI8 (EC 3.1.-.-)] - Ustilago maydis (Smut
fungus)
Length = 645
Score = 225 bits (550), Expect = 9e-58
Identities = 122/242 (50%), Positives = 141/242 (58%), Gaps = 2/242 (0%)
Frame = +2
Query: 5 KXIYSTNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGS--LIGDDQIYDTIVTAHA 178
+ +YSTN KDIGTLY IF + + + GT+ +LIR EL PG L GD Q+Y+ I+TAHA
Sbjct: 3 RWLYSTNAKDIGTLYLIFAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHA 62
Query: 179 XXXXXXXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENGA 358
N LVP+ GAP AFPR I F VE GA
Sbjct: 63 FVMIFFMVMPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGA 122
Query: 359 GTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLP 538
GTG TVYPPLS +H G SVDLAIFSLHL+GISS + +LP
Sbjct: 123 GTGWTVYPPLSGLQSHSGGSVDLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMTLHKLP 182
Query: 539 LFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPE 718
LFV A+ +TA AGAIT+LLTDRN NTSF+DPAGGGDPILYQHLF FFGHPE
Sbjct: 183 LFVWAIFVTAILLLLSLPVLAGAITMLLTDRNFNTSFYDPAGGGDPILYQHLFWFFGHPE 242
Query: 719 VY 724
VY
Sbjct: 243 VY 244
>UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179;
cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
Chondrus crispus (Carragheen)
Length = 532
Score = 220 bits (538), Expect = 2e-56
Identities = 117/242 (48%), Positives = 142/242 (58%), Gaps = 2/242 (0%)
Frame = +2
Query: 5 KXIYSTNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGS--LIGDDQIYDTIVTAHA 178
+ I+STNHKDIGTLY IFG S + G + +LIR EL P + L+G+ QIY+ ++TAHA
Sbjct: 11 RWIFSTNHKDIGTLYLIFGAFSGVLGGCMSMLIRMELAQPSNHLLLGNHQIYNVLITAHA 70
Query: 179 XXXXXXXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENGA 358
N LVP+ G+P AFPR I F +VE G
Sbjct: 71 FLMIFFMVMPVMIGGFGNWLVPIMIGSPDMAFPRLNNISFWLLPPSLCLLLMSALVEVGV 130
Query: 359 GTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLP 538
GTG TVYPPLSS +H G +VDLAIFSLH++G SS S ++P
Sbjct: 131 GTGWTVYPPLSSIQSHSGGAVDLAIFSLHISGASSILGAVNFISTILNMRSPGQSMYRIP 190
Query: 539 LFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPE 718
LFV ++ +TAF AGAIT+LLTDRN NTSFFD +GGGDPILYQHLF FFGHPE
Sbjct: 191 LFVWSILVTAFLLLLAVPVLAGAITMLLTDRNFNTSFFDASGGGDPILYQHLFWFFGHPE 250
Query: 719 VY 724
VY
Sbjct: 251 VY 252
>UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126;
Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
- Placozoan sp. BZ2423
Length = 498
Score = 220 bits (537), Expect = 3e-56
Identities = 116/235 (49%), Positives = 137/235 (58%)
Frame = +2
Query: 5 KXIYSTNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGSLIGDDQIYDTIVTAHAXX 184
+ +S NHKDIG+LY +FG S GT+ +LIR EL +PGS++GDD +Y+ IVTAHA
Sbjct: 6 RWFFSCNHKDIGSLYLVFGALSGAIGTAFSMLIRLELSSPGSMLGDDHLYNVIVTAHAFV 65
Query: 185 XXXXXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENGAGT 364
N VPL GAP AFPR I F +VE GAGT
Sbjct: 66 MIFFLVMPTMIGGFGNWFVPLMIGAPDMAFPRLNNISFWLLPPALFLLLGSSLVEQGAGT 125
Query: 365 G*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 544
G TVYPPL+S AH G SVD+AIFSLHLAG+SS + ++PLF
Sbjct: 126 GWTVYPPLASIQAHSGGSVDMAIFSLHLAGLSSILGAMNFITTVMNMRTPGMTMSRIPLF 185
Query: 545 V*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 709
V +V ITA AGAIT+LLTDR NT+FFDPAGGGDPILYQHLF FFG
Sbjct: 186 VWSVLITAILLLLSLPVLAGAITMLLTDRYFNTTFFDPAGGGDPILYQHLFWFFG 240
>UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;
Bilateria|Rep: Cytochrome c oxidase subunit I - Cotesia
melitaearum (Parasitoid wasp)
Length = 499
Score = 210 bits (513), Expect = 3e-53
Identities = 111/227 (48%), Positives = 133/227 (58%)
Frame = +2
Query: 44 LYFIFGIXSXIXGTSLRLLIRAELGNPGSLIGDDQIYDTIVTAHAXXXXXXXXXXXXXXX 223
LYF+FG+ S + G S+ L+IR ELG PGSLIG+DQIY++IVT+HA
Sbjct: 2 LYFMFGMWSGMLGFSMSLIIRLELGMPGSLIGNDQIYNSIVTSHAFIMIFFMVMPVMIGG 61
Query: 224 XXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIA 403
N L+PL G+P +FPR + F + G GTG TVYPPLS +
Sbjct: 62 FGNWLIPLMLGSPDMSFPRMNNMSFWLLIPSLLLLILSMFINVGVGTGWTVYPPLSLILG 121
Query: 404 HRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXX 583
H G SVDL IFSLHLAG SS + D++ LF +V ITA
Sbjct: 122 HGGMSVDLGIFSLHLAGASSIMGAVNFITTILNMRSNLFNMDKMSLFSWSVFITAILLLL 181
Query: 584 XXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVY 724
AGAIT+LLTDRN+NTSFFDP+GGGDPILYQHLF FFGHPEVY
Sbjct: 182 SLPVLAGAITMLLTDRNMNTSFFDPSGGGDPILYQHLFWFFGHPEVY 228
>UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106;
Bilateria|Rep: Cytochrome c oxidase subunit I -
Homalopoma maculosa
Length = 219
Score = 208 bits (508), Expect = 1e-52
Identities = 113/218 (51%), Positives = 126/218 (57%)
Frame = +2
Query: 44 LYFIFGIXSXIXGTSLRLLIRAELGNPGSLIGDDQIYDTIVTAHAXXXXXXXXXXXXXXX 223
LY I GI S + GT+L LLIR ELG PGS IG+DQ+Y+ +VTAHA
Sbjct: 1 LYLILGIWSGLIGTALSLLIRVELGQPGSFIGNDQLYNVVVTAHAFVMIFFLVMPMMIGG 60
Query: 224 XXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIA 403
N LVPL GAP AFPR + F VE+GAGTG TVYPPLS N A
Sbjct: 61 FGNWLVPLMLGAPDMAFPRLNNMSFWFLPPSLSLLLMSAAVESGAGTGWTVYPPLSGNTA 120
Query: 404 HRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXX 583
H G SVDLAIFSLHLAG+SS + + LFV +V ITA
Sbjct: 121 HAGPSVDLAIFSLHLAGVSSILGAVNFITTVINMRWGAMKIELVSLFVWSVKITAILLLL 180
Query: 584 XXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF 697
AGAIT+LLTDRN NTSFFDPAGGGDPILYQHLF
Sbjct: 181 SLPVLAGAITMLLTDRNFNTSFFDPAGGGDPILYQHLF 218
>UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI5
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI5 (EC
3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
intron-encoded endonuclease aI5 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI5 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 536
Score = 207 bits (505), Expect = 2e-52
Identities = 114/233 (48%), Positives = 133/233 (57%), Gaps = 2/233 (0%)
Frame = +2
Query: 5 KXIYSTNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGS--LIGDDQIYDTIVTAHA 178
+ +YSTN KDIGTLY IF + + + GT+ +LIR EL PG L GD Q+Y+ I+TAHA
Sbjct: 3 RWLYSTNAKDIGTLYLIFAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHA 62
Query: 179 XXXXXXXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENGA 358
N LVP+ GAP AFPR I F VE GA
Sbjct: 63 FVMIFFMVMPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGA 122
Query: 359 GTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLP 538
GTG TVYPPLS +H G SVDLAIFSLHL+GISS + +LP
Sbjct: 123 GTGWTVYPPLSGLQSHSGGSVDLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMTLHKLP 182
Query: 539 LFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF 697
LFV A+ +TA AGAIT+LLTDRN NTSF+DPAGGGDPILYQHLF
Sbjct: 183 LFVWAIFVTAILLLLSLPVLAGAITMLLTDRNFNTSFYDPAGGGDPILYQHLF 235
>UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alpha
precursor (DNA endonuclease I-SceIV) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI5 alpha (EC 3.1.-.-) (Intron-encoded
endonuclease I- SceIV)]; n=2; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI5 alpha precursor (DNA
endonuclease I-SceIV) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI5 alpha (EC 3.1.-.-) (Intron-encoded endonuclease I-
SceIV)] - Saccharomyces cerevisiae (Baker's yeast)
Length = 630
Score = 202 bits (493), Expect = 7e-51
Identities = 111/243 (45%), Positives = 137/243 (56%), Gaps = 2/243 (0%)
Frame = +2
Query: 2 RKXIYSTNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGS--LIGDDQIYDTIVTAH 175
++ +YSTN KDI LYF+ I S + GT++ L+IR EL PGS L G+ Q+++ +V H
Sbjct: 3 QRWLYSTNAKDIAVLYFMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGH 62
Query: 176 AXXXXXXXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENG 355
A N L+PL GA AFPR I F +VE+G
Sbjct: 63 AVLMIFFLVMPALIGGFGNYLLPLMIGATDTAFPRINNIAFWVLPMGLVCLVTSTLVESG 122
Query: 356 AGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQL 535
AGTG TVYPPLSS AH G SVDLAIF+LHL ISS + +L
Sbjct: 123 AGTGWTVYPPLSSIQAHSGPSVDLAIFALHLTSISSLLGAINFIVTTLNMRTNGMTMHKL 182
Query: 536 PLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHP 715
PLFV ++ ITAF + IT+LL DRN NTSFF+ +GGGDPILY+HLF FFGHP
Sbjct: 183 PLFVWSIFITAFLLLLSLPVLSAGITMLLLDRNFNTSFFEVSGGGDPILYEHLFWFFGHP 242
Query: 716 EVY 724
EVY
Sbjct: 243 EVY 245
>UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa
group|Rep: Endonuclease - Saccharomyces servazzii
(Yeast)
Length = 675
Score = 197 bits (481), Expect = 2e-49
Identities = 107/243 (44%), Positives = 135/243 (55%), Gaps = 2/243 (0%)
Frame = +2
Query: 2 RKXIYSTNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGS--LIGDDQIYDTIVTAH 175
++ +YSTN KDI +YF+ + S + G+++ ++IR EL PGS L G+ Q+++ +V H
Sbjct: 3 QRWLYSTNAKDISIMYFMLALFSGMAGSAMSMIIRMELAAPGSQYLHGNSQLFNVLVVGH 62
Query: 176 AXXXXXXXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENG 355
A N ++PL GA +FPR I F +VE+G
Sbjct: 63 AVLMIFFLAMPALIGGFGNYMLPLMIGATDMSFPRINSIGFWLLPMGLVCLVTSTLVESG 122
Query: 356 AGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQL 535
AGTG TVYPPLSS AH G SVDLAIFSLHL ISS S ++
Sbjct: 123 AGTGWTVYPPLSSIQAHSGPSVDLAIFSLHLTSISSLLGAINFIVTTLNMRTNGMSMHKM 182
Query: 536 PLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHP 715
PLFV A+ ITAF + IT+LL DRN NTSFF+ AGGGDPI YQH F FFGHP
Sbjct: 183 PLFVWAIFITAFLLLLSLPVLSAGITMLLMDRNFNTSFFEVAGGGDPIFYQHAFWFFGHP 242
Query: 716 EVY 724
EVY
Sbjct: 243 EVY 245
>UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2
polyprotein; n=1; Phaeosphaeria nodorum SN15|Rep:
Cytochrome oxidase subunits 1 and 2 polyprotein -
Phaeosphaeria nodorum SN15
Length = 789
Score = 197 bits (480), Expect = 3e-49
Identities = 108/237 (45%), Positives = 130/237 (54%), Gaps = 1/237 (0%)
Frame = +2
Query: 17 STNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPG-SLIGDDQIYDTIVTAHAXXXXX 193
S+N KDIG LY I+ + + + GT+ +LIR EL PG I D+Q+Y++I+TAHA
Sbjct: 9 SSNAKDIGVLYLIYALFAGLIGTAFSVLIRLELSGPGVQYIADNQLYNSIITAHAIIMIF 68
Query: 194 XXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENGAGTG*T 373
N L+PL G P FPR I + +ENG GTG T
Sbjct: 69 FMVMPALIGGFGNFLLPLGLGGPDMGFPRLNNISYLLLIPSIVLFLFAGGIENGVGTGWT 128
Query: 374 VYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*A 553
+YPPLS +H G SVDLAIF LHL+GISS +L LF A
Sbjct: 129 LYPPLSGIQSHSGPSVDLAIFGLHLSGISSLLGAMNFMTTTFNMRSPGIRLHKLILFAWA 188
Query: 554 VGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVY 724
V ITA AG IT++LTDRN NTSFF+ AGGGDPILYQHLF FFGHPEVY
Sbjct: 189 VVITAVLLLLSLPVLAGGITMVLTDRNFNTSFFEVAGGGDPILYQHLFWFFGHPEVY 245
>UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1;
Periclimenes thermohydrophilus|Rep: Cytochrome oxidase
subunit I - Periclimenes thermohydrophilus
Length = 217
Score = 193 bits (471), Expect = 3e-48
Identities = 113/219 (51%), Positives = 130/219 (59%)
Frame = -2
Query: 696 NKC*YKIGSPPPAGSKNDVFKFRSVNNIVIAPAKTGSDNNNKNAVIPTAHTNKGN*SNDI 517
NKC + IGSPPPAGSK +VFKFRSV +IVIAPA TGS++N+K AV T TN G S I
Sbjct: 1 NKC-WSIGSPPPAGSKKEVFKFRSVKSIVIAPASTGSESNSKMAVSNTDQTNSGMRSMVI 59
Query: 516 LFNRXXXXXXXXXXXXXIDEIPAKCSEKIARSTDLPLCAILDESGG*TVHPVPAPFSTIL 337
+R I+E PAKC+EKI STD P CAI SGG TVHPVP P STI
Sbjct: 60 PADRMLITVVMKFTAPKIEETPAKCNEKIPMSTDAPACAIPLASGGYTVHPVPTPLSTIP 119
Query: 336 LEINNIREGGRSXNXIXXXRGNAXSGAPXIRGTNQFXXXXXXXXXXXXXXXXKACAVTXX 157
L + ++EGG + N + RGNA SGAP + GTNQF KA AVT
Sbjct: 120 LNKSKVKEGGSNQNLMLFIRGNAMSGAPNMSGTNQFPNPPIMIGMTMKKIITKAWAVT-M 178
Query: 156 XXXXXXXINDPGFPNSARIKSLKDVPXIXDXIPKIKYNV 40
I PG PNSARIKSL DVP + PK+KYNV
Sbjct: 179 TLIWSFPIKLPGCPNSARIKSLSDVPTMPAHAPKMKYNV 217
>UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4
precursor (DNA endonuclease I- SceII) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI4 (EC 3.1.-.-) (Intron-encoded
endonuclease I-SceII)]; n=4; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI4 precursor (DNA
endonuclease I- SceII) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI4 (EC 3.1.-.-) (Intron-encoded endonuclease I-SceII)]
- Saccharomyces cerevisiae (Baker's yeast)
Length = 556
Score = 190 bits (462), Expect = 4e-47
Identities = 106/238 (44%), Positives = 132/238 (55%), Gaps = 2/238 (0%)
Frame = +2
Query: 2 RKXIYSTNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGS--LIGDDQIYDTIVTAH 175
++ +YSTN KDI LYF+ I S + GT++ L+IR EL PGS L G+ Q+++ +V H
Sbjct: 3 QRWLYSTNAKDIAVLYFMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGH 62
Query: 176 AXXXXXXXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENG 355
A N L+PL GA AFPR I F +VE+G
Sbjct: 63 AVLMIFFLVMPALIGGFGNYLLPLMIGATDTAFPRINNIAFWVLPMGLVCLVTSTLVESG 122
Query: 356 AGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQL 535
AGTG TVYPPLSS AH G SVDLAIF+LHL ISS + +L
Sbjct: 123 AGTGWTVYPPLSSIQAHSGPSVDLAIFALHLTSISSLLGAINFIVTTLNMRTNGMTMHKL 182
Query: 536 PLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 709
PLFV ++ ITAF + IT+LL DRN NTSFF+ +GGGDPILY+HLF FFG
Sbjct: 183 PLFVWSIFITAFLLLLSLPVLSAGITMLLLDRNFNTSFFEVSGGGDPILYEHLFWFFG 240
>UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455;
cellular organisms|Rep: Cytochrome c oxidase subunit I -
Pandaka lidwilli
Length = 507
Score = 189 bits (461), Expect = 5e-47
Identities = 106/211 (50%), Positives = 119/211 (56%)
Frame = +2
Query: 26 HKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGSLIGDDQIYDTIVTAHAXXXXXXXXX 205
HKDIGTLY IFG + + GT+L LLIRAEL PG+L+GDDQIY+ IVTAHA
Sbjct: 1 HKDIGTLYLIFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVM 60
Query: 206 XXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 385
N L+PL GAP AFPR + F +E GAGTG TVYPP
Sbjct: 61 PIMIGGFGNWLIPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGIEAGAGTGWTVYPP 120
Query: 386 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 565
L+ N+AH G SVDL IFSLHLAGISS S Q PLFV AV IT
Sbjct: 121 LAGNLAHAGASVDLTIFSLHLAGISSILGAINFITTIMNMKPPAISQYQTPLFVWAVLIT 180
Query: 566 AFXXXXXXXXXAGAITILLTDRNLNTSFFDP 658
A A IT+LLTDRNLNT+FFDP
Sbjct: 181 AVLLLLSLPVLAAGITMLLTDRNLNTTFFDP 211
>UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825;
Eukaryota|Rep: Cytochrome c oxidase subunit I -
Paracoccidioides brasiliensis
Length = 710
Score = 188 bits (459), Expect = 9e-47
Identities = 104/237 (43%), Positives = 127/237 (53%), Gaps = 1/237 (0%)
Frame = +2
Query: 17 STNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPG-SLIGDDQIYDTIVTAHAXXXXX 193
S+N KDI LY IF + S + GT+ +LIR EL PG I D+Q+Y++I+T+H
Sbjct: 35 SSNAKDIAILYLIFALFSGLLGTAFSVLIRLELSGPGIQYIEDNQLYNSIITSHGVIMIF 94
Query: 194 XXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENGAGTG*T 373
N L+P+ G P AFPR + + I+ENG GTG T
Sbjct: 95 FMVMPALIGGFGNFLLPILIGGPDMAFPRLNNVSYWLLIPSLFLFVFAAIIENGVGTGWT 154
Query: 374 VYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*A 553
+YPPLS +H VDL IF LHL+GISS +L LF A
Sbjct: 155 LYPPLSGIQSHSSMGVDLGIFGLHLSGISSLLGAINFIATLLNMRSPGIKLHKLALFGWA 214
Query: 554 VGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVY 724
V ITA A AIT+LLTDRNLNTSF++ AGGGD ILYQHLF FFGHPEVY
Sbjct: 215 VVITAVLLLLSLPVLAAAITMLLTDRNLNTSFYELAGGGDAILYQHLFWFFGHPEVY 271
>UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1;
Naegleria gruberi|Rep: Cytochrome c oxidase subunit 1 -
Naegleria gruberi
Length = 633
Score = 184 bits (449), Expect = 1e-45
Identities = 102/243 (41%), Positives = 120/243 (49%), Gaps = 2/243 (0%)
Frame = +2
Query: 2 RKXIYSTNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGS--LIGDDQIYDTIVTAH 175
+ I++TNHK IG LY FG+ + L +L+R EL PG L G+ Y+ I T H
Sbjct: 6 KSWIFTTNHKRIGILYLFFGVFNGFLAVLLSMLMRLELAFPGDQILFGEYHFYNMITTVH 65
Query: 176 AXXXXXXXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENG 355
N VP+ GAP +FPR F E G
Sbjct: 66 GVLMLFVVVMPILFGGFGNYFVPILIGAPDMSFPRLNNFSFWLLPGAILLAVLATYSEGG 125
Query: 356 AGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQL 535
GTG TVYPPLSS +H G SVDL IFS HL GI S L
Sbjct: 126 PGTGWTVYPPLSSLQSHSGASVDLMIFSFHLVGIGSIVAAINFICTIFYYKNEAMFNKDL 185
Query: 536 PLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHP 715
PLFV +V +T+F A AIT+LL DRN NTSF+DP GGGD +LYQHLF FFGHP
Sbjct: 186 PLFVWSVAVTSFLVIVAIPVLAAAITLLLFDRNFNTSFYDPVGGGDVVLYQHLFWFFGHP 245
Query: 716 EVY 724
EVY
Sbjct: 246 EVY 248
>UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein;
n=1; Saccharomyces castellii|Rep: I-SceII DNA
endonuclease-like protein - Saccharomyces castellii
(Yeast)
Length = 598
Score = 184 bits (448), Expect = 2e-45
Identities = 101/238 (42%), Positives = 131/238 (55%), Gaps = 2/238 (0%)
Frame = +2
Query: 2 RKXIYSTNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGS--LIGDDQIYDTIVTAH 175
++ +YSTN KDI LYF+ + S + GT++ L+IR EL PG L G++Q+++ +V H
Sbjct: 3 QRWLYSTNAKDIAVLYFLLALFSGMAGTAMSLIIRLELAAPGQQYLHGNNQLFNVLVVGH 62
Query: 176 AXXXXXXXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENG 355
A N ++PL GA AFPR I F +VE+G
Sbjct: 63 AILMIFFMVMPALIGGFGNYMLPLMIGATDTAFPRINNIGFWLLPMGLVCLVTSTLVESG 122
Query: 356 AGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQL 535
AGTG TVYPPL+S AH G SVDLAIF+LH+ ISS + +L
Sbjct: 123 AGTGWTVYPPLASIQAHSGPSVDLAIFALHMTSISSLLGAINFIVTTLNMRTNGMTMHKL 182
Query: 536 PLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 709
PLFV A+ ITA + +T+LL DRN NTSFF+ AGGGDPILY+HLF FFG
Sbjct: 183 PLFVWAILITAVLLLLTLPVLSAGVTMLLLDRNFNTSFFEVAGGGDPILYEHLFWFFG 240
>UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15;
Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
- Trichoderma reesei (Hypocrea jecorina)
Length = 635
Score = 177 bits (432), Expect = 2e-43
Identities = 105/241 (43%), Positives = 128/241 (53%), Gaps = 5/241 (2%)
Frame = +2
Query: 17 STNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPG-SLIGDDQIYDTIVTAHAXXXXX 193
STN KDIGTLY IF + S + GT+ +LIR EL PG I ++Q+Y++I+TAHA
Sbjct: 37 STNAKDIGTLYLIFALFSGLLGTAFSVLIRLELSGPGVQFIANNQLYNSIITAHAILMIF 96
Query: 194 XXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENGAGTG*T 373
N L+PL G P AFPR I F I+E G GTG T
Sbjct: 97 FMVMPALIGGFGNFLMPLMIGGPDMAFPRLNNISFWLLPPSLLLLVFSAIIEGGVGTGWT 156
Query: 374 V----YPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPL 541
+ YPPLS +H G SVDLAIF+LHL+G+SS +L L
Sbjct: 157 LLKDKYPPLSGLQSHSGPSVDLAIFALHLSGVSSLLGSINFITTVANMRTPGIKLHKLAL 216
Query: 542 FV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEV 721
F A + IT++LTDRN NTSFF+ AGGGDPIL+QHLF FFGHPEV
Sbjct: 217 FGWATWSSRSRYFL-------GITMVLTDRNFNTSFFEVAGGGDPILFQHLFWFFGHPEV 269
Query: 722 Y 724
Y
Sbjct: 270 Y 270
>UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida
stellata|Rep: Cox1-i5 protein - Candida stellata (Yeast)
Length = 763
Score = 177 bits (431), Expect = 2e-43
Identities = 95/240 (39%), Positives = 133/240 (55%), Gaps = 2/240 (0%)
Frame = +2
Query: 11 IYSTNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELG--NPGSLIGDDQIYDTIVTAHAXX 184
++STN ++I LY IF + S + G SL +L+R EL NP L+ + Q+++ ++TAHA
Sbjct: 23 LFSTNCQNISILYGIFSLFSGLVGLSLSVLMRIELSSPNPQILMHNGQLWNVLITAHALF 82
Query: 185 XXXXXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENGAGT 364
N LVPL G+ AFPR + F +++ G G+
Sbjct: 83 MVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGS 142
Query: 365 G*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 544
G T+YPPL+S +H G S+D+AIF+LHL+G+SS + +LPLF
Sbjct: 143 GWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLF 202
Query: 545 V*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVY 724
V +V ITA A +T+LL DRN NTSFF +GGGDP+LY+H+F FFGHPEVY
Sbjct: 203 VWSVLITAVLIILALPVLAAGLTMLLMDRNFNTSFFVVSGGGDPLLYEHIFWFFGHPEVY 262
>UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida
stellata|Rep: Cox1-i4 protein - Candida stellata (Yeast)
Length = 676
Score = 177 bits (431), Expect = 2e-43
Identities = 95/240 (39%), Positives = 133/240 (55%), Gaps = 2/240 (0%)
Frame = +2
Query: 11 IYSTNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELG--NPGSLIGDDQIYDTIVTAHAXX 184
++STN ++I LY IF + S + G SL +L+R EL NP L+ + Q+++ ++TAHA
Sbjct: 23 LFSTNCQNISILYGIFSLFSGLVGLSLSVLMRIELSSPNPQILMHNGQLWNVLITAHALF 82
Query: 185 XXXXXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENGAGT 364
N LVPL G+ AFPR + F +++ G G+
Sbjct: 83 MVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGS 142
Query: 365 G*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 544
G T+YPPL+S +H G S+D+AIF+LHL+G+SS + +LPLF
Sbjct: 143 GWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLF 202
Query: 545 V*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVY 724
V +V ITA A +T+LL DRN NTSFF +GGGDP+LY+H+F FFGHPEVY
Sbjct: 203 VWSVLITAVLIILALPVLAAGLTMLLMDRNFNTSFFVVSGGGDPLLYEHIFWFFGHPEVY 262
>UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa
group|Rep: COX1-i5 protein - Yarrowia lipolytica
(Candida lipolytica)
Length = 608
Score = 173 bits (421), Expect = 4e-42
Identities = 99/242 (40%), Positives = 127/242 (52%), Gaps = 2/242 (0%)
Frame = +2
Query: 2 RKXIYSTNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGS--LIGDDQIYDTIVTAH 175
++ ++STN KDI LYFIF + S + GT L +IR EL N GS L G+ Q ++ ++TAH
Sbjct: 8 QRWLFSTNAKDIAVLYFIFALFSAMIGTGLSAIIRLELANTGSPFLHGNTQAFNVVITAH 67
Query: 176 AXXXXXXXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENG 355
A N L+PL GA AF R I F +VE G
Sbjct: 68 AILMIFFFVMPALVGGFGNYLMPLMLGASDMAFARLNNISFWLLVPSLILILTSALVEAG 127
Query: 356 AGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQL 535
AGTG TVY PL+ +H G +VDLAIFSLHL+G SS ++ +
Sbjct: 128 AGTGWTVYFPLAGIQSHSGPAVDLAIFSLHLSGFSSLLGAINFITTFINMRTIGMKYENV 187
Query: 536 PLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHP 715
PLF AV TA A +T+ + DRN NTSFF+ AGGGD +LYQHLF ++ HP
Sbjct: 188 PLFAWAVLFTAILLLLSLPVLAAGLTMGIFDRNFNTSFFEYAGGGDAVLYQHLFYWWNHP 247
Query: 716 EV 721
EV
Sbjct: 248 EV 249
>UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3;
Alphaproteobacteria|Rep: Cytochrome-c oxidase -
Sphingomonas sp. SKA58
Length = 556
Score = 169 bits (410), Expect = 8e-41
Identities = 108/261 (41%), Positives = 132/261 (50%), Gaps = 20/261 (7%)
Frame = +2
Query: 2 RKXIYSTNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPG-------SLIGD------ 142
++ STNHKDIGTLY IF I + I G ++ L+RAEL PG + D
Sbjct: 28 QRWFMSTNHKDIGTLYLIFAIIAGIIGGAISGLMRAELAEPGIQYLQTWARFSDGPSATL 87
Query: 143 DQIY---DTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXX 313
DQ Y + ++TAH N VP+ GAP AFPR I F
Sbjct: 88 DQAYHLWNVLITAHGLIMVFFMVMPAMIGGFGNWFVPIMIGAPDMAFPRMNNISFWLLIP 147
Query: 314 XXXXXXXXXIVE----NGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXX 481
V NGAGTG TVY PLS++ G +VD+AI SLH+AG SS
Sbjct: 148 AFALLLGSTFVPGGTGNGAGTGWTVYAPLSTS-GSAGPAVDMAILSLHIAGASSILGAIN 206
Query: 482 XXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPA 661
+ ++PLFV +V +TAF A AIT+LLTDRN T+F+D A
Sbjct: 207 FITTILNMRAPGMTLHKMPLFVWSVLVTAFLLLLALPVLAAAITMLLTDRNFGTTFYDAA 266
Query: 662 GGGDPILYQHLF*FFGHPEVY 724
GGGDP LYQHLF FFGHPEVY
Sbjct: 267 GGGDPELYQHLFWFFGHPEVY 287
>UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|Rep:
Cox-i3 protein - Candida stellata (Yeast)
Length = 588
Score = 165 bits (400), Expect = 1e-39
Identities = 90/235 (38%), Positives = 128/235 (54%), Gaps = 2/235 (0%)
Frame = +2
Query: 11 IYSTNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELG--NPGSLIGDDQIYDTIVTAHAXX 184
++STN ++I LY IF + S + G SL +L+R EL NP L+ + Q+++ ++TAHA
Sbjct: 23 LFSTNCQNISILYGIFSLFSGLVGLSLSVLMRIELSSPNPQILMHNGQLWNVLITAHALF 82
Query: 185 XXXXXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENGAGT 364
N LVPL G+ AFPR + F +++ G G+
Sbjct: 83 MVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGS 142
Query: 365 G*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 544
G T+YPPL+S +H G S+D+AIF+LHL+G+SS + +LPLF
Sbjct: 143 GWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLF 202
Query: 545 V*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 709
V +V ITA A +T+LL DRN NTSFF +GGGDP+LY+H+F FFG
Sbjct: 203 VWSVLITAVLIILALPVLAAGLTMLLMDRNFNTSFFVVSGGGDPLLYEHIFWFFG 257
>UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|Rep:
Cox-i2 protein - Candida stellata (Yeast)
Length = 586
Score = 159 bits (386), Expect = 6e-38
Identities = 87/231 (37%), Positives = 125/231 (54%), Gaps = 2/231 (0%)
Frame = +2
Query: 11 IYSTNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELG--NPGSLIGDDQIYDTIVTAHAXX 184
++STN ++I LY IF + S + G SL +L+R EL NP L+ + Q+++ ++TAHA
Sbjct: 23 LFSTNCQNISILYGIFSLFSGLVGLSLSVLMRIELSSPNPQILMHNGQLWNVLITAHALF 82
Query: 185 XXXXXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENGAGT 364
N LVPL G+ AFPR + F +++ G G+
Sbjct: 83 MVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGS 142
Query: 365 G*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 544
G T+YPPL+S +H G S+D+AIF+LHL+G+SS + +LPLF
Sbjct: 143 GWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLF 202
Query: 545 V*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF 697
V +V ITA A +T+LL DRN NTSFF +GGGDP+LY+H+F
Sbjct: 203 VWSVLITAVLIILALPVLAAGLTMLLMDRNFNTSFFVVSGGGDPLLYEHIF 253
>UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42;
Nematoda|Rep: Cytochrome c oxidase subunit I -
Onchocerca volvulus
Length = 548
Score = 152 bits (369), Expect = 7e-36
Identities = 85/240 (35%), Positives = 113/240 (47%), Gaps = 2/240 (0%)
Frame = +2
Query: 11 IYSTNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGS--LIGDDQIYDTIVTAHAXX 184
I + NHK IGT Y + G + + G+ L +LIR EL +PG G Q+Y++++T H
Sbjct: 16 INTVNHKTIGTYYIVLGYWAGLGGSVLSMLIRFELSSPGGHLFFGSGQVYNSVLTMHGVL 75
Query: 185 XXXXXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENGAGT 364
N ++PL GAP AFPR + F + G G+
Sbjct: 76 MIFFLVMPILIGGFGNWMLPLMLGAPEMAFPRVNALSFWFTFVALLMVYQSFFIGGGPGS 135
Query: 365 G*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 544
T YPPLS S+D I LH GI S + DQ+ +F
Sbjct: 136 SWTFYPPLSVE-GQPELSLDTMILGLHTVGIGSLLGAINFMVTTQNMRSTAVTLDQISMF 194
Query: 545 V*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVY 724
V +T+F AG++ LL DRN NTSF+D GG+P+LYQHLF FFGHPEVY
Sbjct: 195 VWTSYLTSFLLVLSVPVLAGSLLFLLLDRNFNTSFYDTKKGGNPLLYQHLFWFFGHPEVY 254
>UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5;
Naupactini|Rep: Cytochrome c oxidase subunit I -
Galapaganus collaris
Length = 406
Score = 152 bits (368), Expect = 1e-35
Identities = 87/156 (55%), Positives = 96/156 (61%)
Frame = +2
Query: 245 LXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVD 424
L GAP FPR + F VE GAGTG TV PPLS+NIAH G SVD
Sbjct: 4 LXLGAPDXXFPRXINMSFWFLPPXLSFFLXSSXVEKGAGTGWTVSPPLSANIAHEGSSVD 63
Query: 425 LAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAG 604
LAIFSLH+AG+ S + ++PLFV AV ITA AG
Sbjct: 64 LAIFSLHMAGVXSILGAINFISTVLNMRPSGMTPXRMPLFVWAVEITAILLLLSLPVLAG 123
Query: 605 AITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGH 712
AIT+LLTDRN+NTSFFDPAGGGDPILYQHLF F GH
Sbjct: 124 AITMLLTDRNINTSFFDPAGGGDPILYQHLFWFXGH 159
>UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular
organisms|Rep: Cytochrome-c oxidase - Jannaschia sp.
(strain CCS1)
Length = 628
Score = 146 bits (354), Expect = 5e-34
Identities = 78/209 (37%), Positives = 107/209 (51%), Gaps = 2/209 (0%)
Frame = +2
Query: 104 RAELGNPGSLIG--DDQIYDTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLXXGAPXXAFP 277
+A LG L G D +++ ++T H N +PL GAP AFP
Sbjct: 142 QALLGTMDQLDGNPDGHLWNVLITGHGVLMMFFVVIPALFGGFGNYFMPLMIGAPDMAFP 201
Query: 278 RXXXIXFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGI 457
R + + +++ GAG G T YPP+S+ R+VD AIF++H++G
Sbjct: 202 RLNNLSYWMYVAGTCLAFCSVMIDGGAGPGWTFYPPISAQGVETSRAVDFAIFAVHVSGA 261
Query: 458 SSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNL 637
SS + ++PLF +V +TA+ AGAIT+LLTDRN
Sbjct: 262 SSILGSINFITTFLNMRAPGMTLHKVPLFAWSVFVTAWLLLLSLPVLAGAITMLLTDRNF 321
Query: 638 NTSFFDPAGGGDPILYQHLF*FFGHPEVY 724
T+FFDPAGGGDPIL+QH+F FFGHPEVY
Sbjct: 322 GTTFFDPAGGGDPILFQHIFWFFGHPEVY 350
>UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9;
Coelomata|Rep: Cytochrome c oxidase subunit I - Lingula
unguis
Length = 573
Score = 146 bits (353), Expect = 6e-34
Identities = 83/241 (34%), Positives = 115/241 (47%), Gaps = 1/241 (0%)
Frame = +2
Query: 5 KXIYSTNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGSLIGDDQIYDTIVTAHAXX 184
+ + S NHKDIGT+Y G+ S + G SL +R EL +PG + +Y +I+T HA
Sbjct: 7 RWLKSVNHKDIGTIYLYMGLWSGVFGLSLSHCMRIELSHPGEWLQVGYMYHSIMTMHAFM 66
Query: 185 XXXXXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENGAGT 364
N +PL + PR + + G G
Sbjct: 67 MIFFFVMPTSIGGLGNWFIPLMIKIKDLSMPRLNNLSVWLALGSLFLMCMAFLSSGGLGC 126
Query: 365 G*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQL-PL 541
G T+YPPLS++ G +DLA+FSLH+AG+SS F L P+
Sbjct: 127 GWTMYPPLSNSEFMDGLPIDLAVFSLHMAGMSSIAGSINFLVTIFNMRMGALFFMSLNPM 186
Query: 542 FV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEV 721
+ + T+ A +T+LL DR+ +TSF+ P GGGDPIL+QHLF FFGHPEV
Sbjct: 187 LIWTLFGTSILLVTSVPVLAAGLTLLLLDRHFSTSFYYPEGGGDPILWQHLFWFFGHPEV 246
Query: 722 Y 724
Y
Sbjct: 247 Y 247
>UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI4
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI4 (EC
3.1.-.-)]; n=3; Basidiomycota|Rep: Probable
intron-encoded endonuclease aI4 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI4 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 530
Score = 145 bits (351), Expect = 1e-33
Identities = 86/202 (42%), Positives = 103/202 (50%), Gaps = 2/202 (0%)
Frame = +2
Query: 5 KXIYSTNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGS--LIGDDQIYDTIVTAHA 178
+ +YSTN KDIGTLY IF + + + GT+ +LIR EL PG L GD Q+Y+ I+TAHA
Sbjct: 3 RWLYSTNAKDIGTLYLIFAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHA 62
Query: 179 XXXXXXXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENGA 358
N LVP+ GAP AFPR I F VE GA
Sbjct: 63 FVMIFFMVMPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGA 122
Query: 359 GTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLP 538
GTG TVYPPLS +H G SVDLAIFSLHL+GISS + +LP
Sbjct: 123 GTGWTVYPPLSGLQSHSGGSVDLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMTLHKLP 182
Query: 539 LFV*AVGITAFXXXXXXXXXAG 604
LFV A+ +TA AG
Sbjct: 183 LFVWAIFVTAILLLLSLPVLAG 204
>UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7;
Eukaryota|Rep: Cytochrome c oxidase subunit 1 -
Leishmania tarentolae (Sauroleishmania tarentolae)
Length = 549
Score = 143 bits (346), Expect = 5e-33
Identities = 84/238 (35%), Positives = 106/238 (44%), Gaps = 2/238 (0%)
Frame = +2
Query: 17 STNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELG--NPGSLIGDDQIYDTIVTAHAXXXX 190
S +HK IG Y + I S G L IR EL G L GD Q Y+ ++T+H
Sbjct: 10 SVSHKMIGLCYLLVAILSGFVGYVYSLFIRLELSLIGCGILFGDYQFYNVLITSHGLIMV 69
Query: 191 XXXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENGAGTG* 370
N +P+ G P FPR + F + E G G G
Sbjct: 70 FAFIMPVMMGGLVNYFIPVMAGFPDMVFPRLNNMSFWMYLAGFGCVVNGFLTEEGMGVGW 129
Query: 371 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 550
T+YP L H + D +F++HL GISS SF LF+
Sbjct: 130 TLYPTLICIDFHSSLACDFVMFAVHLLGISSILNSINLLGTLFCCRRKFFSFLSWSLFIW 189
Query: 551 AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVY 724
A ITA AG +T++L DRN NTSF+D GGGD IL+QH+F FFGHPEVY
Sbjct: 190 AALITAILLIITLPVLAGGVTLILCDRNFNTSFYDVVGGGDLILFQHIFWFFGHPEVY 247
>UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1;
Dicyema misakiense|Rep: Cytochrome c oxidase subunit I -
Dicyema misakiense
Length = 473
Score = 126 bits (304), Expect = 6e-28
Identities = 83/238 (34%), Positives = 108/238 (45%)
Frame = +2
Query: 11 IYSTNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGSLIGDDQIYDTIVTAHAXXXX 190
I S NH D+ LYF GI S + G S LL R +L P L D +Y+ VT H
Sbjct: 4 IMSVNHIDVSLLYFSLGIFSALLGMSFSLLFRLQLAFPSILTSD--VYNAFVTLHGLVMV 61
Query: 191 XXXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENGAGTG* 370
N L+P P FPR + F ++ + A G
Sbjct: 62 FFAAMPTAIGFFANLLIPYHCNLPDLLFPRMNALSFWLMPFSLSL-----LLFSMASAGW 116
Query: 371 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 550
T YPPLSS SV+ ++FSLHLAGI+S + L LF
Sbjct: 117 TFYPPLSS----LSPSVEFSVFSLHLAGIASLISSCNFLVTMLATRTSL--WYSLSLFCW 170
Query: 551 AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVY 724
++ + + A IT++LTD++L T F+D GGDP+LYQHLF FFGHPEVY
Sbjct: 171 SIVLVSLLLVLSLPVLAVGITLILTDKHLGTCFYDATMGGDPLLYQHLFWFFGHPEVY 228
>UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517;
Bilateria|Rep: Cytochrome c oxidase subunit I -
Schistosoma mansoni (Blood fluke)
Length = 609
Score = 122 bits (293), Expect = 1e-26
Identities = 82/236 (34%), Positives = 103/236 (43%)
Frame = +2
Query: 17 STNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGSLIGDDQIYDTIVTAHAXXXXXX 196
S +HK IG LYF+FG+ G L LLIR L +P + +Y+ +VT H
Sbjct: 107 SLDHKRIGLLYFVFGLWGGFIGLGLSLLIRLNLCDPYYNLVSVDVYNYLVTNHGVAMIFF 166
Query: 197 XXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENGAGTG*TV 376
N +P+ PR + G G G T+
Sbjct: 167 FLMPILIGGFGNYFLPIFLCLDDLLLPRLNSLSLWLMVPSIFYMELSLYY--GCGIGWTL 224
Query: 377 YPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 556
YPPLS G VD +FSLHLAG+SS S + V A
Sbjct: 225 YPPLSI-WEGSGFGVDYLMFSLHLAGVSSLIGSVNFISTIFSRLSFNCS-----IIVWAY 278
Query: 557 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVY 724
T+ A IT+LL DRN T+FF+P+GGGDPIL+QHLF FFGHPEVY
Sbjct: 279 LFTSVLLLLSLPVLASGITMLLFDRNFGTAFFEPSGGGDPILFQHLFWFFGHPEVY 334
>UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388;
Coelomata|Rep: Cytochrome c oxidase subunit I - Picoides
borealis
Length = 513
Score = 115 bits (276), Expect = 1e-24
Identities = 65/129 (50%), Positives = 75/129 (58%)
Frame = +2
Query: 5 KXIYSTNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGSLIGDDQIYDTIVTAHAXX 184
+ + STNHKD GTL IFG + + GT+L LLIRAELG PG+L+GDDQ + IVTAHA
Sbjct: 6 RXLXSTNHKDXGTLXXIFGAWAGMIGTALSLLIRAELGQPGTLLGDDQXXNVIVTAHAFV 65
Query: 185 XXXXXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENGAGT 364
N LVPL GAP AFPR + F VE GAGT
Sbjct: 66 MIFXMXMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSTVEAGAGT 125
Query: 365 G*TVYPPLS 391
G TVYPPL+
Sbjct: 126 GWTVYPPLA 134
>UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107;
Alveolata|Rep: Cytochrome c oxidase subunit 1 -
Plasmodium falciparum
Length = 476
Score = 115 bits (276), Expect = 1e-24
Identities = 74/242 (30%), Positives = 107/242 (44%), Gaps = 4/242 (1%)
Frame = +2
Query: 11 IYSTNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPG-SLIGDDQI--YDTIVTAHAX 181
I + NHK +G Y F G L +++R EL + +I + + Y+ I T H
Sbjct: 9 ITNCNHKTLGLYYLWFSFLFGSYGFLLSVILRTELYSSSLRIIAQENVNLYNMIFTIHGI 68
Query: 182 XXXXXXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENGAG 361
N +P+ G+P A+PR I E G G
Sbjct: 69 IMIFFNIMPGLFGGFGNYFLPILCGSPELAYPRINSISLLLQPIAFVLVILSTAAEFGGG 128
Query: 362 TG*TVYPPLSSNIAHRGR-SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLP 538
TG T+YPPLS+++ +VD+ IF L ++G++S + L
Sbjct: 129 TGWTLYPPLSTSLMSLSPVAVDVIIFGLLVSGVASIMSSLNFITTVMHLRAKGLTLGILS 188
Query: 539 LFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPE 718
+ ++ IT+ G + +LL+D + NT FFDP GDPILYQHLF FFGHPE
Sbjct: 189 VSTWSLIITSGMLLLTLPVLTGGVLMLLSDLHFNTLFFDPTFAGDPILYQHLFWFFGHPE 248
Query: 719 VY 724
VY
Sbjct: 249 VY 250
>UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Euglena
gracilis|Rep: Cytochrome oxidase subunit I - Euglena
gracilis
Length = 495
Score = 110 bits (264), Expect = 4e-23
Identities = 75/246 (30%), Positives = 110/246 (44%), Gaps = 6/246 (2%)
Frame = +2
Query: 5 KXIYSTNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGSLI----GDDQIYDTIVTA 172
K +T+HK IG LY G + I G + +LIR EL G I + IY+ +T
Sbjct: 11 KYTLTTSHKIIGILYGYMGYIAGILGYIISMLIRMELNTQGLAIVRKVKEVTIYNNWITI 70
Query: 173 HAXXXXXXXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIV-E 349
H N L+P+ G + PR I F ++
Sbjct: 71 HGLIMLFVFIMPVGIGFYGNYLIPMLIGTSELSMPRMNGISFWMLIVGVVIFVISNVLMS 130
Query: 350 NGAGTG*TVYPPLSSNIAHR-GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSF 526
+G T+YPPLS+ A G ++DL++ +H+ GISS +F
Sbjct: 131 KPISSGWTLYPPLSTRDADNIGVNIDLSLLVVHVLGISSTIGSVNYITTNKYNRHVGLTF 190
Query: 527 DQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FF 706
+ ++ ++ +T+ AIT LL DRN+N++ +D G DP+LYQHLF FF
Sbjct: 191 MNINIYNFSIIVTSILLIGSLPILGVAITGLLLDRNINSTIYDVIG--DPVLYQHLFWFF 248
Query: 707 GHPEVY 724
GHPEVY
Sbjct: 249 GHPEVY 254
>UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase,
subunit I; n=2; Halobacteriaceae|Rep: Cytochrome-c-like
terminal oxidase, subunit I - Haloquadratum walsbyi
(strain DSM 16790)
Length = 634
Score = 109 bits (263), Expect = 5e-23
Identities = 83/248 (33%), Positives = 113/248 (45%), Gaps = 8/248 (3%)
Frame = +2
Query: 5 KXIYSTNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGSLIGDDQIYDTIVTAHAXX 184
+ + + +HKDIG LY FG+ + G + +L+R EL +PG + + Y++++T+H
Sbjct: 87 RWLTTVDHKDIGLLYGAFGLTAFAVGGLMVVLMRIELADPGMTVISNTFYNSLLTSHG-I 145
Query: 185 XXXXXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXF--XXXXXXXXXXXXXXIVE-NG 355
N L+PL GA AFPR I F I E
Sbjct: 146 TMLFLFATPIIAAFSNYLIPLLIGADDMAFPRINAIAFWLLPPAALLIWAGFFPIPEVIP 205
Query: 356 AGTG*TVYPPLS-----SNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXX 520
A TG T+Y PLS N A+ G VDL + LHL+G+S+
Sbjct: 206 AQTGWTMYTPLSVGEGMGNQANAG--VDLMLLGLHLSGVSATMGSINFIATIFTERGKNV 263
Query: 521 SFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF* 700
S+ L +F + + AI +LL DRN TSFF AG G IL+QHLF
Sbjct: 264 SWANLDIFSWTILTQSGLILFAFPLLGSAIMMLLFDRNFGTSFF--AGEGGAILWQHLFW 321
Query: 701 FFGHPEVY 724
FFGHPEVY
Sbjct: 322 FFGHPEVY 329
>UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3;
Theileria|Rep: Cytochrome c oxidase subunit 1 -
Theileria parva
Length = 481
Score = 109 bits (261), Expect = 9e-23
Identities = 72/239 (30%), Positives = 103/239 (43%), Gaps = 3/239 (1%)
Frame = +2
Query: 17 STNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPG-SLIGDD--QIYDTIVTAHAXXX 187
S NHK IG Y + G + +LIR EL G +I D +IY+ + T H
Sbjct: 14 SGNHKIIGISYLWLAYWFGMIGFYMSVLIRTELSMSGLKIITMDTLEIYNLLFTLHGLIM 73
Query: 188 XXXXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENGAGTG 367
N L P+ G +PR +E G+GTG
Sbjct: 74 VFFNIMTGLFGGIGNYLYPVLLGYCDVVYPRVNLYSLLFQPIGFVLVVSSIYLEIGSGTG 133
Query: 368 *TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV 547
T+YPPLS+++++ G +D IF L AGI+S D++
Sbjct: 134 WTLYPPLSTSLSNVG--IDFIIFGLLAAGIASTLSSVNFITTFTSVKTIGFVIDRISPAA 191
Query: 548 *AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVY 724
++ +T+F ++ DR+ NT FF+ + GDP+LYQHLF FFGHPEVY
Sbjct: 192 WSIVLTSFLLLLSLPVVTAVFLMVFLDRHYNTMFFESSNSGDPVLYQHLFWFFGHPEVY 250
>UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1;
Watasenia scintillans|Rep: Cytochrome c oxidase subunit
I - Watasenia scintillans (Sparkling enope)
Length = 217
Score = 104 bits (250), Expect = 2e-21
Identities = 62/141 (43%), Positives = 72/141 (51%)
Frame = +2
Query: 41 TLYFIFGIXSXIXGTSLRLLIRAELGNPGSLIGDDQIYDTIVTAHAXXXXXXXXXXXXXX 220
TLYFIFGI S + GTSL L+IR ELG PGSL+ DDQ+Y+ +VTAH
Sbjct: 1 TLYFIFGIWSGLLGTSLSLMIRTELGQPGSLLNDDQLYNVVVTAHGFIMIFFMVMPIMIG 60
Query: 221 XXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNI 400
N LVPL GAP AFPR + F + G + PL
Sbjct: 61 GFGNWLVPLMLGAPDMAFPRMNNMSFGFFPLHWHYYSFFTV--KGGLARDELSTPLYLVT 118
Query: 401 AHRGRSVDLAIFSLHLAGISS 463
G SVDLAIF LHLAG+SS
Sbjct: 119 ISAGPSVDLAIFPLHLAGVSS 139
>UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;
Aeropyrum pernix|Rep: Heme-copper oxidase subunit I+III
- Aeropyrum pernix
Length = 815
Score = 104 bits (249), Expect = 3e-21
Identities = 75/242 (30%), Positives = 102/242 (42%), Gaps = 2/242 (0%)
Frame = +2
Query: 5 KXIYSTNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGSLIGDDQIYDTIVTAHAXX 184
+ I +T+HKDIG LY + I + SL LL R +L P S Y VT H
Sbjct: 14 RWITTTDHKDIGLLYLVTSIAFLLIAGSLALLFRVQLAIPKSNFLTGDAYYEAVTVHG-L 72
Query: 185 XXXXXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENGA-G 361
N +VPL GA AFPR + + E+GA
Sbjct: 73 IMLLWFASPFAFGLANYIVPLQIGARDLAFPRLNALSYWLYLLSGLVLLASFFTESGAPN 132
Query: 362 TG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPL 541
G T+Y PL++ I G +DLA ++ L +S + ++P+
Sbjct: 133 VGWTLYAPLTARIYTPGIGLDLAALAIFLFSLSVTLGTINFLVTIAAMRAPGIGWFKMPM 192
Query: 542 FV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFF-DPAGGGDPILYQHLF*FFGHPE 718
F ++ T +LL DRNL T FF +PAGG +L+ HLF FFGHPE
Sbjct: 193 FTWSILFTVILMLWAFPPLMVGGALLLLDRNLGTEFFLNPAGGA--LLWDHLFWFFGHPE 250
Query: 719 VY 724
VY
Sbjct: 251 VY 252
>UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2;
Cystobacterineae|Rep: Cytochrome-c oxidase -
Anaeromyxobacter sp. Fw109-5
Length = 596
Score = 101 bits (243), Expect = 1e-20
Identities = 77/260 (29%), Positives = 107/260 (41%), Gaps = 19/260 (7%)
Frame = +2
Query: 2 RKXIYSTNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNP-------GSLI-GDDQI-- 151
R+ ++S +HK I + G+ + G +L +LIR + G P G L+ G+ +
Sbjct: 23 RRYVFSIDHKMIAKQFLWAGLLFLLVGGALAMLIRWQWGFPYRPVPLVGRLLFGESGVIG 82
Query: 152 ---YDTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXX 322
Y I T H N L+PL GA AFPR F
Sbjct: 83 PATYQQIFTTHGLVMIFFAVTPVLIGTFGNLLIPLMIGARDMAFPRLNMYSFWTFLLSQL 142
Query: 323 XXXXXXIVENG-AGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXX 499
G AG G T Y PLS+N+ G L + ++ + G+SS
Sbjct: 143 LVLASFFAPLGSAGAGWTTYTPLSTNVGMPGMGQTLVVAAIFVTGVSSTMGAVNYITTVI 202
Query: 500 XXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPA-----G 664
++ +LPL + + +TA A +LL DR+ T FF G
Sbjct: 203 RLRAPGMTYMRLPLTIWGLWLTAILNALFVPVLGSAALLLLLDRSFGTEFFVAGASAVRG 262
Query: 665 GGDPILYQHLF*FFGHPEVY 724
GGDPIL+QHLF FGHPEVY
Sbjct: 263 GGDPILWQHLFWIFGHPEVY 282
>UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4;
Halobacteriaceae|Rep: Cytochrome c oxidase polypeptide 1
- Halobacterium salinarium (Halobacterium halobium)
Length = 593
Score = 101 bits (241), Expect = 2e-20
Identities = 70/238 (29%), Positives = 101/238 (42%), Gaps = 2/238 (0%)
Frame = +2
Query: 17 STNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGSLIGDDQIYDTIVTAHAXXXXXX 196
+ +HKDIG LY ++G + G LL+R EL + +Y+ ++T+H
Sbjct: 65 TVDHKDIGILYGVYGTIAFAWGGVSVLLMRTELATSSETLISPSLYNGLLTSHGITMLFL 124
Query: 197 XXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVEN--GAGTG* 370
N +PL A AFPR I F ++ A T
Sbjct: 125 FGTPMIAAFG-NYFIPLLIDADDMAFPRINAIAFWLLPPGAILIWSGFLIPGIATAQTSW 183
Query: 371 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 550
T+Y PLS ++ +VD+ + LHL G+S+ + L +F
Sbjct: 184 TMYTPLSLQMS--SPAVDMMMLGLHLTGVSATMGAINFIATIFTERGEDVGWPDLDIFSW 241
Query: 551 AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVY 724
+ + A+ +LL DRN T+FF AGG DPI +QHLF FFGHPEVY
Sbjct: 242 TMLTQSGLILFAFPLFGSALIMLLLDRNFGTTFFTVAGG-DPIFWQHLFWFFGHPEVY 298
>UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16;
cellular organisms|Rep: Cytochrome C oxidase subunit I -
Rhizobium loti (Mesorhizobium loti)
Length = 623
Score = 100 bits (239), Expect = 4e-20
Identities = 72/237 (30%), Positives = 98/237 (41%), Gaps = 1/237 (0%)
Frame = +2
Query: 17 STNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGS-LIGDDQIYDTIVTAHAXXXXX 193
+ +HK IG Y + G L LL+R +L P + IG D+ Y+ I T H
Sbjct: 26 TVDHKIIGRRYTVTAFVFLALGGVLALLMRLQLAQPEARFIGPDR-YNQIFTMHGSNMMF 84
Query: 194 XXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENGAGTG*T 373
LVPL G AFPR + V+ G G
Sbjct: 85 LFAVPVMQAMAIY-LVPLMVGTRHIAFPRLNAFSYWMYLAGGLLLWIAFAVDTGPDIGWF 143
Query: 374 VYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*A 553
Y PLS G+ D+ + +S+ S D++PLFV +
Sbjct: 144 AYVPLSGPQYAAGKRADIWAQMITFTEVSALAIAVEIVVTVFKQRAPGMSLDRIPLFVWS 203
Query: 554 VGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVY 724
+ +T+F A T L+ DR + T FF+PA GGD +L+QHLF FFGHPEVY
Sbjct: 204 MLVTSFLVILAMPAIMIASTSLILDRLVGTHFFNPAEGGDVLLWQHLFWFFGHPEVY 260
>UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1;
Myxococcus xanthus DK 1622|Rep: Cytochrome c oxidase,
subunit I - Myxococcus xanthus (strain DK 1622)
Length = 556
Score = 99 bits (238), Expect = 5e-20
Identities = 70/242 (28%), Positives = 100/242 (41%), Gaps = 1/242 (0%)
Frame = +2
Query: 2 RKXIYSTNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGSLIGDDQIYDTIVTAHAX 181
+ + + +HK IG ++ + + + G LLIR EL PG I D Y+ T H
Sbjct: 34 KSWLLTVDHKRIGLMFLFWVLLFFLVGGIFALLIRVELLTPGPTIMDAMTYNRTFTLHGL 93
Query: 182 XXXXXXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENGAG 361
N ++PL GA AFPR + ++ G
Sbjct: 94 VMIFLFMIPAIPAVFGNFMLPLMLGAKDVAFPRLNLLSLYIYLAGAVLALWG-MLNGGLD 152
Query: 362 TG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPL 541
TG T Y P S AH +V +F + G SS ++ ++PL
Sbjct: 153 TGWTFYTPYS---AHTTTTVAPVLFGAFIIGFSSIVTGINFIVTCHTMRAPGITWFKMPL 209
Query: 542 FV*AVGITAFXXXXXXXXXAGAITILLTDRNL-NTSFFDPAGGGDPILYQHLF*FFGHPE 718
FV A+ T+ G + +L+T NL FDPA GGDP+L+QHLF F+ HP
Sbjct: 210 FVWAIYATS-CIQVLATPVIGLLLVLVTVENLFGFGMFDPARGGDPVLFQHLFWFYSHPA 268
Query: 719 VY 724
VY
Sbjct: 269 VY 270
>UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93;
Actinobacteria (class)|Rep: Cytochrome c oxidase subunit
1 - Corynebacterium glutamicum (Brevibacterium flavum)
Length = 584
Score = 99 bits (238), Expect = 5e-20
Identities = 69/237 (29%), Positives = 96/237 (40%), Gaps = 1/237 (0%)
Frame = +2
Query: 17 STNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGSLIGDDQIYDTIVTAHAXXXXXX 196
+T+HK +G +Y I G + LLIRAEL PG ++ ++ + T H
Sbjct: 35 TTDHKQLGIMYIIMSFSFFFLGGLMALLIRAELFTPGLQFLSNEQFNQLFTMHG-TVMLL 93
Query: 197 XXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENGAGT-G*T 373
N ++PL GAP AFPR F + GA G T
Sbjct: 94 LYGTPIVWGFANYVLPLQIGAPDVAFPRLNAFGFWITTVGGVAMLTGFLTPGGAADFGWT 153
Query: 374 VYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*A 553
+Y PLS I G D+ I + GI S + ++P+F
Sbjct: 154 MYSPLSDAIHSPGLGSDMWIVGVGATGIGSVASAINMLTTILCLRAPGMTMFRMPIFTWN 213
Query: 554 VGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVY 724
+ + + A +L DR L +DPA GG +L+QHLF FFGHPEVY
Sbjct: 214 IFVVSVLALLIFPLLLAAALGVLYDRKLGGHLYDPANGGS-LLWQHLFWFFGHPEVY 269
>UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=38;
Bacteria|Rep: Cytochrome c oxidase subunit I type -
Anaeromyxobacter sp. Fw109-5
Length = 555
Score = 98.3 bits (234), Expect = 2e-19
Identities = 67/241 (27%), Positives = 97/241 (40%)
Frame = +2
Query: 2 RKXIYSTNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGSLIGDDQIYDTIVTAHAX 181
+ + + +HK IG ++ + S G LLIR EL PG I D Y+ + T H
Sbjct: 27 KSWLLTQDHKRIGVMFLVATTISFALGGFFALLIRLELLTPGPTIMDAMTYNRMFTLHGV 86
Query: 182 XXXXXXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENGAG 361
N L+P+ GA AFP+ + F +V+ GA
Sbjct: 87 VMIFLFMIPAIPSGFGNFLLPIMIGAKDVAFPKLNLLSFYVYLAGAVVALFG-MVQGGAD 145
Query: 362 TG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPL 541
TG T Y P S+ + V L F L G SS + +LPL
Sbjct: 146 TGWTFYTPYSTTTITKVVPVLLGAFIL---GFSSILTGLNFIVTTHTMRAPGMGWTRLPL 202
Query: 542 FV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEV 721
FV ++ T+ ++ ++ + FDPA GGDP+L+QH F F+ HP V
Sbjct: 203 FVWSIYATSVIQILATPVLGMSLLLVAVEHAFGWGIFDPARGGDPVLFQHFFWFYSHPAV 262
Query: 722 Y 724
Y
Sbjct: 263 Y 263
>UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2;
Roseiflexus|Rep: Cytochrome-c oxidase - Roseiflexus sp.
RS-1
Length = 641
Score = 97.9 bits (233), Expect = 2e-19
Identities = 68/236 (28%), Positives = 93/236 (39%)
Frame = +2
Query: 17 STNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGSLIGDDQIYDTIVTAHAXXXXXX 196
+T+HK IG +Y + + G LL+R +LG P + +Y+ + T H
Sbjct: 28 TTDHKRIGIMYLVSAFVFFLIGGIEALLMRIQLGVPDNTFLTPDVYNQMFTMHGTTMIFL 87
Query: 197 XXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENGAGTG*TV 376
N +VPL GA AFPR + V G
Sbjct: 88 GLMPLNVGLG-NYMVPLMIGARDMAFPRLNALSIWLFIFGGLMLYVSFFVGGAPNVGWFA 146
Query: 377 YPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 556
Y PL+ VD I + L G++S + +++PLFV
Sbjct: 147 YAPLTQKQFAPTAGVDYWIVGIGLTGVASIAGALNFIVTILNMRAPGMTLNRMPLFVWMQ 206
Query: 557 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVY 724
+ AF A LL DR+ T FF P GGD +L+QHLF FFGHPEVY
Sbjct: 207 LVVAFILIFAFPVLTVATIQLLFDRHFGTRFFLPNLGGDAVLWQHLFWFFGHPEVY 262
>UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16;
Bacteria|Rep: Cytochrome c oxidase subunit I -
Synechococcus sp. (strain CC9311)
Length = 564
Score = 96.7 bits (230), Expect = 5e-19
Identities = 67/240 (27%), Positives = 97/240 (40%), Gaps = 3/240 (1%)
Frame = +2
Query: 14 YSTNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGSLIGDDQIYDTIVTAHAXXXXX 193
++T+ K IG Y + + G L +++R EL P + + D +Y+ + T H
Sbjct: 32 FNTDAKVIGIQYIATAMLFLLVGGLLAMIVRGELITPPADLVDPSVYNGLYTMHGTVMLF 91
Query: 194 XXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENG-AGTG* 370
N L+P GAP AFP+ F G A +G
Sbjct: 92 LFLFPILNGFN-NLLIPTMIGAPDMAFPKLNAAAFWLVPVFSIVLMGSFFAPGGPASSGW 150
Query: 371 TVYPPLS--SNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 544
YPP+S + + H L I ++ L+GISS F ++P+F
Sbjct: 151 WSYPPMSLQNPLGHFINGEFLWILAVALSGISSIMGAINFVTTIIRMRAPGMGFFRMPVF 210
Query: 545 V*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVY 724
V G +LL D + TSFF P GGGDP+L+QH F F+ HP VY
Sbjct: 211 VWTAWAAQTIQLIGLPALTGGAVMLLFDLSFGTSFFRPEGGGDPVLFQHFFWFYSHPAVY 270
>UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC
1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1);
n=59; Cyanobacteria|Rep: Cytochrome c oxidase subunit 1
(EC 1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1) -
Synechocystis sp. (strain PCC 6803)
Length = 551
Score = 96.7 bits (230), Expect = 5e-19
Identities = 70/237 (29%), Positives = 91/237 (38%)
Frame = +2
Query: 14 YSTNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGSLIGDDQIYDTIVTAHAXXXXX 193
+ +HK IG Y + G S +R EL P ++Y+ ++T H
Sbjct: 23 FCVDHKVIGIQYLVTSFLFFFIGGSFAEAMRTELATPSPDFVQPEMYNQLMTLHGTIMIF 82
Query: 194 XXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENGAGTG*T 373
N L+PL G AFPR + F V G T
Sbjct: 83 LWIVPAGAAFA-NYLIPLMVGTEDMAFPRLNAVAFWLTPPGGILLISSFFV-GAPQAGWT 140
Query: 374 VYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*A 553
YPPLS G +L I SL L G SS +PLF A
Sbjct: 141 SYPPLSLLSGKWGE--ELWILSLLLVGTSSILGAINFVTTILKMRIKDMDLHSMPLFCWA 198
Query: 554 VGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVY 724
+ T+ A A+ +L D TSFF+P GGGDP++YQHLF F+ HP VY
Sbjct: 199 MLATSSLILLSTPVLASALILLSFDLIAGTSFFNPVGGGDPVVYQHLFWFYSHPAVY 255
>UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1;
Aplidium nordmanni|Rep: Cytochrome c oxidase subunit I -
Aplidium nordmanni
Length = 227
Score = 95.9 bits (228), Expect = 9e-19
Identities = 83/227 (36%), Positives = 92/227 (40%), Gaps = 1/227 (0%)
Frame = +2
Query: 26 HKDIGTLYFIFGIXSX-IXGTSLRLLIRAELGNPGSLIGDDQIYDTIVTAHAXXXXXXXX 202
HKD GTL F F S G L R L G +IG QI VTA A
Sbjct: 1 HKDXGTLXFXFXXWSAXFXGXXFXLXXRXXLSXXGQVIGXGQIXXVGVTAXALVMIFFFV 60
Query: 203 XXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENGAGTG*TVYP 382
L PL GAP A PR + F + G G VYP
Sbjct: 61 MPTLXGGFGXXLXPLXVGAPXMAXPRLXNMSFWLLPPSLXXLCLSVFIGXGVGXXWXVYP 120
Query: 383 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 562
P SS +AH +VDL IF LHLAGISS ++ LF
Sbjct: 121 PXSSGLAHSSGAVDLGIFXLHLAGISSXLGSMNFLVTLGNMKXKGLNYGNFSLFCWXXVX 180
Query: 563 TAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*F 703
A AIT+L R N SFF P G P + F F
Sbjct: 181 XXXXLILSXPVLAAAITMLXXXRXXNXSFFXPXXXGXPXXFPTFFXF 227
>UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI2
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI2 (EC
3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
intron-encoded endonuclease aI2 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI2 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 533
Score = 95.9 bits (228), Expect = 9e-19
Identities = 57/134 (42%), Positives = 68/134 (50%), Gaps = 2/134 (1%)
Frame = +2
Query: 5 KXIYSTNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPG--SLIGDDQIYDTIVTAHA 178
+ +YSTN KDIGTLY IF + + + GT+ +LIR EL PG L GD Q+Y+ I+TAHA
Sbjct: 3 RWLYSTNAKDIGTLYLIFAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHA 62
Query: 179 XXXXXXXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENGA 358
N LVP+ GAP AFPR I F VE GA
Sbjct: 63 FVMIFFMVMPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGA 122
Query: 359 GTG*TVYPPLSSNI 400
GTG TV LS I
Sbjct: 123 GTGWTVKCKLSQII 136
>UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3;
Bacteria|Rep: Cytochrome caa3 oxidase - Planctomyces
maris DSM 8797
Length = 754
Score = 95.5 bits (227), Expect = 1e-18
Identities = 66/238 (27%), Positives = 94/238 (39%)
Frame = +2
Query: 11 IYSTNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGSLIGDDQIYDTIVTAHAXXXX 190
+ + +HK IG +Y + + G LL+R +L P + ++++ + T H
Sbjct: 27 VSTLDHKRIGIMYILTAVFYLAVGGFEALLMRIQLAFPNNTFLSPEMFNQLFTMHGTTMV 86
Query: 191 XXXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENGAGTG* 370
N VPL GA AFPR F + + G
Sbjct: 87 FLVGMPVLTGFA-NYFVPLMIGARDVAFPRLNSFGFWMFFFGAALLHFSFLTGSAPNAGW 145
Query: 371 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 550
Y PLSS + VD I L + GI S S ++PLFV
Sbjct: 146 FSYVPLSSKAYSSLQGVDYWIIGLLIMGIGSVSGAINIFATIINLRAPGMSLQRVPLFVW 205
Query: 551 AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVY 724
+ + A A+ +LL DR L ++FFDP GG +L+QH F FGHPEVY
Sbjct: 206 MMLMQAILIILALPALNSALAMLLIDRWLGSAFFDPTRGGSAVLWQHYFWIFGHPEVY 263
>UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol
oxidase, subunit 1; n=2; Thermoprotei|Rep:
Heme/copper-type cytochrome/quinol oxidase, subunit 1 -
Cenarchaeum symbiosum
Length = 508
Score = 94.7 bits (225), Expect = 2e-18
Identities = 74/239 (30%), Positives = 100/239 (41%), Gaps = 1/239 (0%)
Frame = +2
Query: 11 IYSTNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGS-LIGDDQIYDTIVTAHAXXX 187
++ST+H D+G LY I + G +L LLIRAEL PG+ I D ++ + T H
Sbjct: 15 MFSTHHTDVGLLYLISSLGFLFLGGALALLIRAELFFPGTQFIADSMTFNRMFTVHGTTL 74
Query: 188 XXXXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENGAGTG 367
N VP+ A+P+ I F + T
Sbjct: 75 IFLFILPFASAVG-NYFVPIMVRYKDMAYPKLNAIAFWMIPPAGALVWLGFADFSWYAT- 132
Query: 368 *TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV 547
PP S I+ G + D+ IF L + GISS S Q+PL
Sbjct: 133 ----PPYSV-ISAPGPAADMWIFGLKILGISSILGSINFIVTILKCKHPDMSLGQVPLLA 187
Query: 548 *AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVY 724
+ ++ A A+ +LLTDR + FF+PA GGDPI Y HLF F HPEVY
Sbjct: 188 WSYLSSSLIVLVALPTFAAALLMLLTDRLGVSGFFNPAVGGDPIAYAHLFWFTFHPEVY 246
>UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=1;
Beggiatoa sp. PS|Rep: Cytochrome c oxidase aa3, subunit
1 - Beggiatoa sp. PS
Length = 525
Score = 93.1 bits (221), Expect = 6e-18
Identities = 70/243 (28%), Positives = 101/243 (41%), Gaps = 2/243 (0%)
Frame = +2
Query: 2 RKXIYSTNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGSLIGDD-QIYDTIVTAHA 178
++ I++T+HK +G LY I I + + +LIR EL G I DD +Y+T + H
Sbjct: 6 KEWIFTTDHKRVGILYLIGSIAAFAVAGIMAMLIRLELSQIGPTITDDPSVYNTWLYFHG 65
Query: 179 XXXXXXXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENGA 358
N +PL GA AFPR + + +
Sbjct: 66 AAMILAFQIPALTGFFANYFIPLMIGAKDVAFPRVNALSVWLFYAGVLVALTTFFIPDPP 125
Query: 359 GTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLP 538
T YPP S I H + FS+ L G +S +++L
Sbjct: 126 DIMWTGYPPYSI-ITHGNTA--FYTFSVLLLGFASILGGVNFLTTVTFMRAPGIGWNKLN 182
Query: 539 LFV*AVGITAFXXXXXXXXXAG-AITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHP 715
+FV A + AF G A+T+L D+ + T FFD A GGD + YQ+LF F+ HP
Sbjct: 183 IFVWAT-LAAFVLQLIFVPVLGTAVTMLTFDKYIGTHFFDAAAGGDALTYQNLFWFYSHP 241
Query: 716 EVY 724
VY
Sbjct: 242 AVY 244
>UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia
polymorpha|Rep: CoxI intron4 ORF - Marchantia polymorpha
(Liverwort)
Length = 434
Score = 91.9 bits (218), Expect = 1e-17
Identities = 49/127 (38%), Positives = 66/127 (51%), Gaps = 2/127 (1%)
Frame = +2
Query: 2 RKXIYSTNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGSLI--GDDQIYDTIVTAH 175
++ ++STNHKDIGTLY IFG + + GT +LIR EL PG+ I G+ Q+Y+ ++TAH
Sbjct: 6 QRWLFSTNHKDIGTLYLIFGAIAGVMGTCFSVLIRMELAQPGNQILGGNHQLYNVLITAH 65
Query: 176 AXXXXXXXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENG 355
A N VP+ G+P AFPR I F +VE G
Sbjct: 66 AFLMIFFMVMPAMIGGFGNWFVPILIGSPDMAFPRLNNISFWLLPPSLLLLLSSALVEVG 125
Query: 356 AGTG*TV 376
G+G TV
Sbjct: 126 CGSGWTV 132
>UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1;
Aquifex aeolicus|Rep: Cytochrome c oxidase subunit I -
Aquifex aeolicus
Length = 485
Score = 89.4 bits (212), Expect = 8e-17
Identities = 60/201 (29%), Positives = 84/201 (41%)
Frame = +2
Query: 122 PGSLIGDDQIYDTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFX 301
PG + D + Y+ ++T H N L+PL GA AFPR + +
Sbjct: 2 PGMQVVDFKTYNYLLTGHGVGMLFWWAIAAHIGGFGNFLLPLMIGAKDVAFPRLNALSWW 61
Query: 302 XXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXX 481
I N T T YPP S N + L +F +HL G SS
Sbjct: 62 AFFAANVLFLMTLIPGNHIMTMWTGYPPFSLN--NDAGVTALYVFVMHLLGASSIATAVN 119
Query: 482 XXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPA 661
+F + LFV + AGA+T+L D+ L T+FF+PA
Sbjct: 120 FLVTYITMRAPGYTFFKTNLFVHTLIAANVIQLVGVPSLAGAVTMLFLDKYLGTNFFNPA 179
Query: 662 GGGDPILYQHLF*FFGHPEVY 724
GGDP++YQ++F F+ HP VY
Sbjct: 180 KGGDPLIYQNIFWFYSHPVVY 200
>UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2;
Rhodobacteraceae|Rep: QoxA, Quinol oxidase subunit I -
Roseovarius nubinhibens ISM
Length = 818
Score = 87.4 bits (207), Expect = 3e-16
Identities = 60/236 (25%), Positives = 90/236 (38%)
Frame = +2
Query: 17 STNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGSLIGDDQIYDTIVTAHAXXXXXX 196
+ NH D+G ++ + + G L +LIRA+L P S + Y+ + T H
Sbjct: 26 TVNHTDLGRMFLTVAVFFFVVGGVLAMLIRAQLATPRSAFLGPEHYNQVFTMHGTIMMFL 85
Query: 197 XXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENGAGTG*TV 376
L+P G+ AFPR F + +G +
Sbjct: 86 FAIPVFEGFAVY-LLPKLLGSRDLAFPRLTAYGFWCYVFGGSMMIFSLLWGIAPDSGWFM 144
Query: 377 YPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 556
YPPLSS + G + D + + IS+ S ++P+F
Sbjct: 145 YPPLSSTLGAPGINSDFWLIGITFVEISAIAAAVEITVTVLRYRAPGMSLSKMPIFAWYA 204
Query: 557 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVY 724
+TA +L +R + FF A GGD +L+QHLF FGHPEVY
Sbjct: 205 LVTAVMILTGFPPLILGSILLELERAFDMPFFQAAAGGDALLWQHLFWLFGHPEVY 260
>UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-)
(Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
subunit qoxB) (Oxidase aa(3)-600 subunit 1); n=45;
Bacillales|Rep: Quinol oxidase subunit 1 (EC 1.10.3.-)
(Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
subunit qoxB) (Oxidase aa(3)-600 subunit 1) - Bacillus
subtilis
Length = 649
Score = 84.6 bits (200), Expect = 2e-15
Identities = 61/238 (25%), Positives = 90/238 (37%)
Frame = +2
Query: 11 IYSTNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGSLIGDDQIYDTIVTAHAXXXX 190
I + +HK +G +Y I + G L++RA+L P + D Y+ I T H
Sbjct: 48 ITTVDHKKLGIMYIISAVIMLFRGGVDGLMMRAQLALPNNSFLDSNHYNEIFTTHGTIMI 107
Query: 191 XXXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENGAGTG* 370
N +VPL GA AFP + F ++ G
Sbjct: 108 IFMAMPFLIGLI-NVVVPLQIGARDVAFPYLNNLSFWTFFVGAMLFNISFVIGGSPNAGW 166
Query: 371 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 550
T Y PL+SN G + + L +AGI + + ++P+F
Sbjct: 167 TSYMPLASNDMSPGPGENYYLLGLQIAGIGTLMTGINFMVTILKMRTKGMTLMRMPMFTW 226
Query: 551 AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVY 724
IT A+ +L DR FF GG P+L+ +LF +GHPEVY
Sbjct: 227 TTLITMVIIVFAFPVLTVALALLSFDRLFGAHFFTLEAGGMPMLWANLFWIWGHPEVY 284
>UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC
1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Caa-3605 subunit 1) (Oxidase
aa(3) subunit 1); n=13; Bacillaceae|Rep: Cytochrome c
oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c oxidase
polypeptide I) (Cytochrome aa3 subunit 1) (Caa-3605
subunit 1) (Oxidase aa(3) subunit 1) - Bacillus subtilis
Length = 622
Score = 84.6 bits (200), Expect = 2e-15
Identities = 55/236 (23%), Positives = 93/236 (39%)
Frame = +2
Query: 17 STNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGSLIGDDQIYDTIVTAHAXXXXXX 196
+ +HK I LY + G + G + IR +L P + Q Y+ ++T H
Sbjct: 21 TVDHKKIAILYLVAGGFFFLVGGIEAMFIRIQLAKPENAFLSAQAYNEVMTMHGTTMIFL 80
Query: 197 XXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENGAGTG*TV 376
N +VPL GA +FP + F + G T
Sbjct: 81 AAMPLLFALM-NAVVPLQIGARDVSFPFLNALGFWLFFFGHIFLNLSWFLGGAPDAGWTS 139
Query: 377 YPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 556
Y LS + +G +D + L ++G+ + ++ +LPLF
Sbjct: 140 YASLS--LHSKGHGIDFFVLGLQISGLGTLIAGINFLATIINMRAPGMTYMRLPLFTWTT 197
Query: 557 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVY 724
+ + + +++ DR T+FF+P GG+ ++++HLF FGHPEVY
Sbjct: 198 FVASALILFAFPPLTVGLALMMLDRLFGTNFFNPELGGNTVIWEHLFWIFGHPEVY 253
>UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia
lipolytica|Rep: COX1-i3 protein - Yarrowia lipolytica
(Candida lipolytica)
Length = 457
Score = 83.4 bits (197), Expect = 5e-15
Identities = 51/135 (37%), Positives = 66/135 (48%), Gaps = 2/135 (1%)
Frame = +2
Query: 2 RKXIYSTNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGS--LIGDDQIYDTIVTAH 175
++ ++STN KDI LYFIF + S + GT L +IR EL N GS L G+ Q ++ ++TAH
Sbjct: 8 QRWLFSTNAKDIAVLYFIFALFSAMIGTGLSAIIRLELANTGSPFLHGNTQAFNVVITAH 67
Query: 176 AXXXXXXXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENG 355
A N L+PL GA AF R I F +VE G
Sbjct: 68 AILMIFFFVMPALVGGFGNYLMPLMLGASDMAFARLNNISFWLLVPSLILILTSALVEAG 127
Query: 356 AGTG*TVYPPLSSNI 400
AGTG TV SS +
Sbjct: 128 AGTGWTVKKICSSKM 142
>UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=4;
cellular organisms|Rep: Cytochrome C oxidase subunit I
/III - Pyrobaculum aerophilum
Length = 800
Score = 83.4 bits (197), Expect = 5e-15
Identities = 68/247 (27%), Positives = 99/247 (40%), Gaps = 11/247 (4%)
Frame = +2
Query: 17 STNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGN--PGSLIGD---DQIYDTIVTAHAX 181
+TN IG LY + I + + + +R + N PGS + D + +Y ++ H
Sbjct: 11 TTNAHYIGILYILLSIINFVLAGIAAMYMRLTIANTPPGSPVQDPFNELLYTWFMSLHGL 70
Query: 182 XXXXXXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIV-ENGA 358
N LVP GAP +PR + F + ++G
Sbjct: 71 GMLLLFAMQAVAGAA-NILVPKLIGAPDMYWPRINALSFWMQVPATVFMWSSLLFWQHGD 129
Query: 359 GTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLP 538
G T+YPPLS+ + VDL + + +AG SS +
Sbjct: 130 SIGWTLYPPLST--ISKSIGVDLILLGIIIAGFSSTLTGINFILTITRLRRPDIKMLDMS 187
Query: 539 LFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFF-----DPAGGGDPILYQHLF*F 703
LF +V + A +LL +R+L FF DPA GDP L+QH+F F
Sbjct: 188 LFAWSVLAASMLMVTALPPLAAGAIMLLLERHLGMHFFTPVPGDPAASGDPRLFQHIFWF 247
Query: 704 FGHPEVY 724
FGHPEVY
Sbjct: 248 FGHPEVY 254
>UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobacter
shibae DFL 12|Rep: Cytochrome-c oxidase -
Dinoroseobacter shibae DFL 12
Length = 853
Score = 83.0 bits (196), Expect = 7e-15
Identities = 59/240 (24%), Positives = 92/240 (38%)
Frame = +2
Query: 5 KXIYSTNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGSLIGDDQIYDTIVTAHAXX 184
+ + + +H+ +G + I G + LL+R +L P + + Y+ + T H
Sbjct: 48 RVLSAVSHRAVGKRFLITGFIFFLIAGVFALLVRLQLMVPENTFLSSETYNQLFTMHGTI 107
Query: 185 XXXXXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENGAGT 364
L+PL GA FPR + + +
Sbjct: 108 MMFLFAIPMLEGFAVY-LIPLMIGARDLVFPRLGAFGYYCYLFGGIIVLSSFLFDAAPDG 166
Query: 365 G*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 544
G +Y PLS++ G S D + + LA I+S S ++P+
Sbjct: 167 GWFMYVPLSTSAYTEGLSADFWLIGITLAEIASVTAAVEIIAAILCSRAPGMSLTKMPIL 226
Query: 545 V*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVY 724
+ + TAF +L +R L FFD GGDP+L+QHLF FGHPEVY
Sbjct: 227 MWYLLATAFMIAIAFPPLIIGSILLEAERLLGLPFFDHTLGGDPLLWQHLFWLFGHPEVY 286
>UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III (EC
1.9.3.1) (Cytochrome c aa(3) subunit 1); n=2; Thermus
thermophilus|Rep: Cytochrome c oxidase polypeptide I+III
(EC 1.9.3.1) (Cytochrome c aa(3) subunit 1) - Thermus
thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Length = 791
Score = 83.0 bits (196), Expect = 7e-15
Identities = 61/237 (25%), Positives = 90/237 (37%), Gaps = 1/237 (0%)
Frame = +2
Query: 17 STNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGSLIGDDQIYDTIVTAHAXXXXXX 196
+ +HK IG +Y + LLIR +L P + + Y+ I+T H
Sbjct: 21 TVDHKKIGLMYTATAFFAFALAGVFSLLIRTQLAVPNNQFLTGEQYNQILTLHGATMLFF 80
Query: 197 XXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENGA-GTG*T 373
N +VPL GA A PR + GA G T
Sbjct: 81 FIIQAGLTGFGNFVVPLMLGARDVALPRVNAFSYWAFLGAIVLALMSYFFPGGAPSVGWT 140
Query: 374 VYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*A 553
Y P S A VD + ++ L G SS S ++P++V +
Sbjct: 141 FYYPFS---AQSESGVDFYLAAILLLGFSSLLGNANFVATIYNLRAQGMSLWKMPIYVWS 197
Query: 554 VGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVY 724
V + A ++L +R + S+F+PA GGDP+L+Q F F+ HP VY
Sbjct: 198 VFAASVLNLFSLAGLTAATLLVLLERKIGLSWFNPAVGGDPVLFQQFFWFYSHPTVY 254
>UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15;
Proteobacteria|Rep: Quinol oxidase subunit I -
Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides)
Length = 825
Score = 82.2 bits (194), Expect = 1e-14
Identities = 58/236 (24%), Positives = 90/236 (38%)
Frame = +2
Query: 17 STNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGSLIGDDQIYDTIVTAHAXXXXXX 196
+ NH D+G ++ + + G L +LIRA+L +P S + Y + T H
Sbjct: 26 TVNHTDLGRMFLGASVVFFLIGGILAMLIRAQLASPRSAFVGAETYAQLFTMHGTIMMFL 85
Query: 197 XXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENGAGTG*TV 376
L+P G+ A+PR F + +G +
Sbjct: 86 FAIPMFEGLTIY-LLPKMLGSRDLAYPRLSAYGFWCYVLGGSMLIVALLAGIAPDSGWFM 144
Query: 377 YPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 556
YPPL+S + G + D + + IS+ S D++P++
Sbjct: 145 YPPLASTLGSPGINSDFWLLGITFVEISAIAAAVEIVVTVLRFRAPGMSLDRMPIYGWYA 204
Query: 557 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVY 724
+TA +L +R FF A GGD +L+QHLF FGHPEVY
Sbjct: 205 LVTATMILTGFPPLILGSILLELERAFGLPFFQVAEGGDSLLWQHLFWLFGHPEVY 260
>UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacillus
flagellatus KT|Rep: Cytochrome-c oxidase -
Methylobacillus flagellatus (strain KT / ATCC 51484 /
DSM 6875)
Length = 631
Score = 81.8 bits (193), Expect = 2e-14
Identities = 61/234 (26%), Positives = 88/234 (37%)
Frame = +2
Query: 23 NHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGSLIGDDQIYDTIVTAHAXXXXXXXX 202
N +IG + + G I G L LL+R +L P + D + Y+ + + H
Sbjct: 35 NQTNIGMRFIVTGFIFFILGVILALLMRLQLAVPENDFMDPETYNQVFSMHGITMMFLFA 94
Query: 203 XXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENGAGTG*TVYP 382
++PL G FPR + ++ G YP
Sbjct: 95 IPVMEGFAVY-IIPLMLGTRDMTFPRLNAFGYYIYLIAGVMMYAALLLRIAPDAGWFSYP 153
Query: 383 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 562
PL+ G +D + IS+ S +++P+FV AV +
Sbjct: 154 PLAGASFSPGLGLDFYTTVVTFMEISALVAAIELIATIFKCKVPGMSLNRMPIFVWAVLV 213
Query: 563 TAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVY 724
+F A +L DR FF A GDPIL+QHLF FFGHPEVY
Sbjct: 214 MSFMIVFALPPLVIASLMLALDRMAGMHFFT-AASGDPILWQHLFWFFGHPEVY 266
>UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30;
Proteobacteria|Rep: Cytochrome-c oxidase - Burkholderia
cenocepacia MC0-3
Length = 1004
Score = 80.6 bits (190), Expect = 4e-14
Identities = 63/241 (26%), Positives = 91/241 (37%)
Frame = +2
Query: 2 RKXIYSTNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGSLIGDDQIYDTIVTAHAX 181
R + + +HK IG Y + + G L++R +L P + + YD++ T H
Sbjct: 41 RGWLGTVDHKRIGLRYIVTAFVFLLLGGVEALVMRIQLARPNATVLTPAQYDSLFTMHGV 100
Query: 182 XXXXXXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENGAG 361
N L PL G+ AFPR + +
Sbjct: 101 TMIFLYALPVLSGFA-NYLWPLMLGSRDMAFPRLTAFSYWSFLFAGLFLYASFPLGAVPD 159
Query: 362 TG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPL 541
G Y PL+S G ++D+ + L GIS+ S D+LP+
Sbjct: 160 GGWFNYVPLTSLDYSAGANIDIYGLGMILLGISTTGGAANFVVTLLRMRAHGMSIDRLPI 219
Query: 542 FV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEV 721
V + + A +L DRN T FFD A GG P+L+QHLF F HP V
Sbjct: 220 IVWGTLTASVSNLVAVPSVSLAFLLLWLDRNAGTHFFDVAHGGRPLLWQHLFWMFAHPWV 279
Query: 722 Y 724
Y
Sbjct: 280 Y 280
>UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1;
Kluyveromyces thermotolerans|Rep: Putative DNA
endonuclease - Kluyveromyces thermotolerans (Yeast)
Length = 542
Score = 79.0 bits (186), Expect = 1e-13
Identities = 46/127 (36%), Positives = 64/127 (50%), Gaps = 2/127 (1%)
Frame = +2
Query: 2 RKXIYSTNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGS--LIGDDQIYDTIVTAH 175
++ +YSTN KDI LYFIF I + GT++ ++IR EL PG+ L G+ Q+++ +V H
Sbjct: 3 QRWLYSTNAKDIAILYFIFAIFCGMAGTAMSVIIRLELAAPGNQYLGGNHQLFNVLVVGH 62
Query: 176 AXXXXXXXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENG 355
A N L+PL GA +F R I F +VE+G
Sbjct: 63 AVLMIFFLVMPALIGGFGNYLLPLMIGASDMSFARLNNISFWLLPPALVCLVTSTLVESG 122
Query: 356 AGTG*TV 376
AGTG TV
Sbjct: 123 AGTGWTV 129
>UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit I;
n=22; Bacteria|Rep: Cytochrome o ubiquinol oxidase,
subunit I - Chromobacterium violaceum
Length = 680
Score = 78.6 bits (185), Expect = 1e-13
Identities = 65/244 (26%), Positives = 95/244 (38%), Gaps = 3/244 (1%)
Frame = +2
Query: 2 RKXIYSTNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNP-GSLIG--DDQIYDTIVTA 172
++ + S +HK IG +Y I + + G + L++R +L G G + YD I TA
Sbjct: 47 KEWLTSVDHKKIGVMYIIVAMIMLLRGFADALMMRTQLAMATGGAHGVFPPEHYDQIFTA 106
Query: 173 HAXXXXXXXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVEN 352
H N +VPL GA AFP + F V N
Sbjct: 107 HGVIMIIFMAMPFMTGLM-NIVVPLQIGARDVAFPFLNSLSFWLLVSAVILVNLSLGVGN 165
Query: 353 GAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQ 532
A TG YPPL+ VD I++L ++GI +
Sbjct: 166 FARTGWVAYPPLAELGFSPDVGVDYYIWALQISGIGTTLTAINFLVTVIKMRAPGMKLMD 225
Query: 533 LPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGH 712
+P+F GA+ +L DR L+ FF GG+ ++Y +LF +GH
Sbjct: 226 MPIFTWTCTWANVLIATSFPILTGALAMLALDRYLDFHFFTAELGGNAMMYLNLFWAWGH 285
Query: 713 PEVY 724
PEVY
Sbjct: 286 PEVY 289
>UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1;
Blastopirellula marina DSM 3645|Rep: Cytochrome c
oxidase subunit I - Blastopirellula marina DSM 3645
Length = 595
Score = 78.2 bits (184), Expect = 2e-13
Identities = 73/267 (27%), Positives = 104/267 (38%), Gaps = 29/267 (10%)
Frame = +2
Query: 11 IYSTNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGS---LIGD-----------DQ 148
++S +HK IG + + + G L L IR +L P S +IG +
Sbjct: 27 VFSKDHKVIGIQFLFSTLIWFVVGGMLALGIRWQLAWPWSDMPIIGGMLFPEQGGQIAPE 86
Query: 149 IYDTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXX 328
Y +VT HA N L+PL GA AFP + +
Sbjct: 87 FYTVLVTMHATVMIFLVIIPILAGAFGNFLIPLMIGADDMAFPTLNMLSYWFMWPAFFFF 146
Query: 329 XXXXIVE-NGAGTG*TVYPPLS---SNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXX 496
+ +GA G T YPPLS ++ G + L + + G+SS
Sbjct: 147 GGAFFCDGHGAAAGWTSYPPLSDMTTSAPSSGAAQTLWLLGVTTVGVSSMLGSVNYMTTI 206
Query: 497 XXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDP------ 658
+ +LPL + A+ ITA A ++L DR + T FF P
Sbjct: 207 IQMRAPGMTMFRLPLTIWAMFITALLQAFALPVLTAAGFMMLADRLIGTGFFLPEGLVVN 266
Query: 659 -----AGGGDPILYQHLF*FFGHPEVY 724
AGGG P+L+QHLF F+ HP VY
Sbjct: 267 NSPMAAGGGQPLLWQHLFWFYSHPAVY 293
>UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5;
Sulfolobaceae|Rep: Quinol oxidase subunit 1/3 -
Sulfolobus acidocaldarius
Length = 788
Score = 77.0 bits (181), Expect = 4e-13
Identities = 68/239 (28%), Positives = 95/239 (39%), Gaps = 1/239 (0%)
Frame = +2
Query: 11 IYSTNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGSLIGDDQIYDTIVTAHAXXXX 190
+Y+TN D+G +Y + GI + I G+ LIR +L +L D YD VT H
Sbjct: 11 LYTTNASDVGQMYIVLGIVALIIGSVNAALIRDQLSF-NNLNAVDY-YDA-VTLHGIFMI 67
Query: 191 XXXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENGAGTG* 370
N LVP GA +P+ + F ++ G
Sbjct: 68 FFVVMPLSTGFA-NYLVPRMIGAHDLYWPKINALSFWMLVPAVILAAISPLL-GAVDLGW 125
Query: 371 TVYPPLS-SNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV 547
+Y PLS + G +L +L L+G+SS + ++PLFV
Sbjct: 126 YMYAPLSVETTVNYGLGTNLIQIALILSGLSSTLTGVNFVMTITKMKKVP--YLKMPLFV 183
Query: 548 *AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVY 724
TA + +R T FFD A GG P+L+Q LF FFGHPEVY
Sbjct: 184 WGFFTTAILMIIAMPSLTAGLVFAYLERLWGTPFFDSALGGSPVLWQQLFWFFGHPEVY 242
>UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3.-)
(Ubiquinol oxidase polypeptide I) (Cytochrome o subunit
1) (Oxidase BO(3) subunit 1); n=240; Bacteria|Rep:
Ubiquinol oxidase subunit 1 (EC 1.10.3.-) (Ubiquinol
oxidase polypeptide I) (Cytochrome o subunit 1) (Oxidase
BO(3) subunit 1) - Pseudomonas putida
Length = 672
Score = 74.9 bits (176), Expect = 2e-12
Identities = 63/241 (26%), Positives = 92/241 (38%), Gaps = 5/241 (2%)
Frame = +2
Query: 17 STNHKDIGTLYFIFGIXSXIXGTSLRLLIRAEL-----GNPGSLIGDDQIYDTIVTAHAX 181
+ +HK IG +Y I + + G + +++R +L G+ G L + YD I TAH
Sbjct: 51 TVDHKKIGVMYIIVAMVMLLRGFADAIMMRTQLAAATGGSEGYL--PPEHYDQIFTAHGV 108
Query: 182 XXXXXXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENGAG 361
N VPL GA AFP + F V A
Sbjct: 109 IMIIFMAMPFFTGLM-NLAVPLQIGARDVAFPFLNSLSFYLLLAGVLLVNISLGVGEFAK 167
Query: 362 TG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPL 541
TG YPPL+ G VD I++L L+G+ + +P+
Sbjct: 168 TGWVAYPPLAGIQYSPGVGVDYYIWALQLSGLGTTLTGVNFLVTVMKMRAPGMKLMDMPI 227
Query: 542 FV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEV 721
F A+ +L DR L+ F GG+P++Y +LF +GHPEV
Sbjct: 228 FTWTCTWANVLIVASFPILTAALALLTVDRYLDFHIFTNELGGNPMMYVNLFWAWGHPEV 287
Query: 722 Y 724
Y
Sbjct: 288 Y 288
>UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase
polypeptide I (Cytochrome BB3 subunit 1) (Oxidase BB(3)
subunit 1); n=20; cellular organisms|Rep: Alternative
Cytochrome c oxidase polypeptide I (Cytochrome BB3
subunit 1) (Oxidase BB(3) subunit 1) - Microscilla
marina ATCC 23134
Length = 635
Score = 74.1 bits (174), Expect = 3e-12
Identities = 74/270 (27%), Positives = 106/270 (39%), Gaps = 30/270 (11%)
Frame = +2
Query: 5 KXIYSTNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGS-------LIG-------- 139
K I+S +HK I + GI + G + L+ R +LG P ++G
Sbjct: 37 KYIFSEDHKVIAKQFLFTGIFWAVIGGLMSLVFRLQLGFPEMSMEFLRPILGGWITEAGK 96
Query: 140 -DDQIYDTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXX 316
+ + Y +VT H N L+PL GA A + +
Sbjct: 97 LEPEFYLALVTMHGTIMVFFVLTAGLSGTFSNFLIPLQIGARDMASGFMNMLSYWFFFGS 156
Query: 317 XXXXXXXXIVENGAGTG*-TVYPPLSS---NIAHRGRSVDLAIFSLHLAGISSXXXXXXX 484
+E G +G +YPPLS+ ++ G + + + S+ L IS
Sbjct: 157 SVIMFASIFLETGPASGSWVIYPPLSALPQAMSGSGAGMTMWLISMALFIISVLLGGINY 216
Query: 485 XXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDP-- 658
SF +LPL + A ITA A +L+ DR+L TSFF
Sbjct: 217 ITTVINLRVKGMSFTRLPLTIWAFFITAIIGLLSFPVLFSAALLLIFDRSLGTSFFLSEI 276
Query: 659 --AG------GGDPILYQHLF*FFGHPEVY 724
AG GG P+L+QHLF F GHPEVY
Sbjct: 277 YIAGEALHHQGGSPVLFQHLFWFLGHPEVY 306
>UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2;
Deinococcus|Rep: Cytochrome c oxidase, subunit I -
Deinococcus radiodurans
Length = 820
Score = 73.7 bits (173), Expect = 4e-12
Identities = 58/236 (24%), Positives = 82/236 (34%)
Frame = +2
Query: 17 STNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGSLIGDDQIYDTIVTAHAXXXXXX 196
+T+HK IG LY I I G L L IR +L P + Y+ ++T HA
Sbjct: 29 TTDHKKIGLLYIIVSILGFCLGGLLALAIRVQLALPEQTLLVGTTYNQVLTMHAAIMLFF 88
Query: 197 XXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENGAGTG*TV 376
N +PL G A PR G T
Sbjct: 89 FLIPLGLFGFGNYFLPLQLGVRDVALPRLNTFAVWLFIASLILVVLGLFNGGAPSVGWTF 148
Query: 377 YPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 556
Y PL+ + G SV + L+ G+ S ++P+F ++
Sbjct: 149 YYPLTMDGNQTGVSVFMVAVILN--GLGSLLGSANFAATIVNLRAPGMGLWKMPVFAWSI 206
Query: 557 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVY 724
T+ A + + L S F+P GG P+LYQ F F+ HP VY
Sbjct: 207 FATSILQLLTLGGLTAAALLTYLEIKLGLSMFNPGIGGVPVLYQQFFWFYSHPAVY 262
>UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3;
Halobacteriaceae|Rep: Cytochrome c oxidase subunit I -
Haloarcula marismortui (Halobacterium marismortui)
Length = 854
Score = 73.7 bits (173), Expect = 4e-12
Identities = 64/249 (25%), Positives = 93/249 (37%), Gaps = 13/249 (5%)
Frame = +2
Query: 17 STNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGSLIGDDQIYDTIVTAHAXXXXXX 196
+TNHKDIG LY I + + G L LL R EL + G+ + Y+ V+ H
Sbjct: 19 TTNHKDIGVLYLITALFFLVFGGVLALLFRLELISSGADLLGSMGYNQAVSTHG-LLMVF 77
Query: 197 XXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENGAGTG*TV 376
N LVPL GA AFPR + + G T+
Sbjct: 78 WFISPFAFGFANYLVPLQIGADDLAFPRLNALSYWLYLFSGILMGVSFFQGTTFAGGWTM 137
Query: 377 YPPLS--SNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 550
Y PL+ + I G + +L + + +P+F
Sbjct: 138 YAPLNTPAYIPGEGLGATSVVLALIMFTAAVTLGSVNFLTTMYRMRAEGLRMRDIPIFSL 197
Query: 551 AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFF-----------DPAGGGDPILYQHLF 697
++ +T + A+ IL +D L T++F D G +L+ HLF
Sbjct: 198 SINLTVWMMLFAFAALLAALMILASDHILGTTYFQYSIDGTTMATDADNPGASLLWAHLF 257
Query: 698 *FFGHPEVY 724
FFGHPEVY
Sbjct: 258 WFFGHPEVY 266
>UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subunit 1
(EC 1.9.3.1) (Alternative cytochrome c oxidase
polypeptide I) (Cytochrome BB3 subunit 1) (Oxidase BB(3)
subunit 1); n=25; Bacteria|Rep: Alternative cytochrome c
oxidase subunit 1 (EC 1.9.3.1) (Alternative cytochrome c
oxidase polypeptide I) (Cytochrome BB3 subunit 1)
(Oxidase BB(3) subunit 1) - Bradyrhizobium japonicum
Length = 591
Score = 72.9 bits (171), Expect = 7e-12
Identities = 70/255 (27%), Positives = 96/255 (37%), Gaps = 15/255 (5%)
Frame = +2
Query: 5 KXIYSTNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGSL-IGDDQIYDTIVTAHAX 181
+ ++S + K I Y + + L L+R +LG PG+ D Y +T H
Sbjct: 31 RYVFSQDAKVIAIQYSLTASAIGLVALVLSWLMRLQLGFPGTFSFIDANQYLQFITMHGM 90
Query: 182 XXXXXXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENG-A 358
N L+PL GA FP + + V G
Sbjct: 91 IMVIYLLTALFLGGFGNYLIPLMVGARDMVFPYVNMLSYWVYLLAVLVLASAFFVPGGPT 150
Query: 359 GTG*TVYPP--LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQ 532
G G T+YPP + S + + L + SL L I + +
Sbjct: 151 GAGWTLYPPQAILSGTPGQDWGIVLMLSSLILFIIGFTMGGLNYVVTVLQARTRGMTLMR 210
Query: 533 LPLFV*AV-GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPA----------GGGDPI 679
LPL V + T G++ +LL DR L TSFF P GGG P+
Sbjct: 211 LPLTVWGIFTATVMALLAFPALFVGSVMLLL-DRLLGTSFFMPTLVEMGQLSKYGGGSPL 269
Query: 680 LYQHLF*FFGHPEVY 724
L+QHLF FFGHPEVY
Sbjct: 270 LFQHLFWFFGHPEVY 284
>UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5;
Proteobacteria|Rep: Cytochrome c oxidase, subunit I -
Mesorhizobium sp. (strain BNC1)
Length = 845
Score = 72.5 bits (170), Expect = 1e-11
Identities = 62/241 (25%), Positives = 88/241 (36%), Gaps = 1/241 (0%)
Frame = +2
Query: 5 KXIYSTNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNP-GSLIGDDQIYDTIVTAHAX 181
+ I + N++ IG LY I L L++R +L P L+G D Y+ I T H
Sbjct: 32 RLISAVNNQVIGILYVGAAFLFFILAGILGLIMRTQLAVPENDLVGQD-FYNQIFTVHGT 90
Query: 182 XXXXXXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENGAG 361
L+P A FPR +
Sbjct: 91 TMMFLFAVPVVEALGVM-LLPQMLAARDLPFPRLSAFAIWAYIVGGLVFFSTVFYDLAPK 149
Query: 362 TG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPL 541
G +YPPL+ G + D + + IS+ S ++P+
Sbjct: 150 GGWFMYPPLTLKEYSPGDNADFWLLGIGFIEISAIAGAIEIIVGTLRTRPPGMSLTRMPI 209
Query: 542 FV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEV 721
F A+ I A A +L +R+ FF GGDP+L+QHLF FFGHPEV
Sbjct: 210 FAWAMLIFAAMIMIAFPAVILATMLLEIERSFGWPFFTAERGGDPLLWQHLFWFFGHPEV 269
Query: 722 Y 724
Y
Sbjct: 270 Y 270
>UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17;
Bacteria|Rep: Cytochrome C oxidase subunit I -
Symbiobacterium thermophilum
Length = 628
Score = 72.1 bits (169), Expect = 1e-11
Identities = 58/242 (23%), Positives = 90/242 (37%), Gaps = 4/242 (1%)
Frame = +2
Query: 11 IYSTNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGSLIGDDQIYDTIVTAHAXXXX 190
+ + +HK IG +Y + G + G ++R +L PG + + ++ + T HA
Sbjct: 24 VATVDHKRIGIMYGVTGFFFFLVGGLEAWIMRLQLARPGLEVVTARTFNALFTMHATTMI 83
Query: 191 XXXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENGAG--- 361
N +PL GA AFPR + ++ G
Sbjct: 84 FLGVMPLLSAFM-NYFLPLMIGARDVAFPRLNAFSYWIYLFGALFINAGWLMGTAGGHVP 142
Query: 362 -TG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLP 538
G Y L+S G D L L GI + + ++P
Sbjct: 143 DIGWFGYANLTSVQFTSGLGPDFWTLGLLLLGIGTLVSGFNFIVTILNMRAPGMTLMKMP 202
Query: 539 LFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPE 718
+FV +T+ A+ +L+ DR +FF+ GG + YQHLF FGHPE
Sbjct: 203 VFVWTTLVTSAIIIFAFPSVTVALIMLMFDRTFAANFFEVLRGGSVVFYQHLFWTFGHPE 262
Query: 719 VY 724
VY
Sbjct: 263 VY 264
>UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1;
Munidopsis verrucosus|Rep: Cytochrome c oxidase subunit
1 - Munidopsis verrucosus
Length = 154
Score = 70.9 bits (166), Expect = 3e-11
Identities = 39/83 (46%), Positives = 48/83 (57%)
Frame = +2
Query: 383 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 562
PL+S+IAH G SVD+AIFSLHLAG+SS + D++PLF+ AV I
Sbjct: 72 PLASSIAHAGASVDMAIFSLHLAGVSSILGSVNFMTTVINMRAKGMTLDRVPLFIWAVFI 131
Query: 563 TAFXXXXXXXXXAGAITILLTDR 631
T AGAIT+LLTDR
Sbjct: 132 TTVLLLLSLPVLAGAITMLLTDR 154
>UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;
n=2; Thermoplasmatales|Rep: Cytochrome c oxidase
polypeptide I/III - Picrophilus torridus
Length = 841
Score = 69.7 bits (163), Expect = 7e-11
Identities = 66/249 (26%), Positives = 96/249 (38%), Gaps = 11/249 (4%)
Frame = +2
Query: 11 IYSTNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPG------SLIG----DDQIYDT 160
I++TNHK IG LY + + I G + LL+R +L P S+ D Y+
Sbjct: 27 IFTTNHKQIGLLYILTSLFFFIGGGVMALLMRVQLAIPRYDLVKYSIFSGRFLDALQYNQ 86
Query: 161 IVTAHAXXXXXXXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXX 340
+VT H L+PL G+ +PR + +
Sbjct: 87 LVTIHGLTMLIWFLGPLGTGFGIY-LIPLAIGSRDMIYPRMNALGYWLFLFSGIMLWSGF 145
Query: 341 IVENG-AGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXX 517
+ G TG TVY PLSS D A ++ L GI +
Sbjct: 146 FLPGGNLDTGWTVYEPLSSFKFTPYLGADTAAAAVVLRGIGTIIASTEILATIFKARAKG 205
Query: 518 XSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF 697
LPLFV AV A G +LL ++ S++ GG +++++LF
Sbjct: 206 YRMMNLPLFVWAVFWVAAISWFVFPEITGLFFLLLVGNLMHASYYISNYGG-ALMWENLF 264
Query: 698 *FFGHPEVY 724
+FGHPEVY
Sbjct: 265 WYFGHPEVY 273
>UniRef50_A4WT83 Cluster: Cytochrome c, monohaem; n=3;
Rhodobacteraceae|Rep: Cytochrome c, monohaem -
Rhodobacter sphaeroides ATCC 17025
Length = 878
Score = 67.7 bits (158), Expect = 3e-10
Identities = 51/236 (21%), Positives = 85/236 (36%)
Frame = +2
Query: 17 STNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGSLIGDDQIYDTIVTAHAXXXXXX 196
+ N+ ++G Y + + + L +L+R +L PG+ ++ T H
Sbjct: 54 AVNNSEVGVWYALTALAFMLCAGVLAVLMRVQLAVPGNDFLSADRFNQFFTMHGSAMMFL 113
Query: 197 XXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENGAGTG*TV 376
L+P GA FPR + + + +G +
Sbjct: 114 FAVPMFEAISII-LLPALLGARDLPFPRLSAYGYWCFLIGGVFVMGSILFDAAPKSGWFM 172
Query: 377 YPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 556
YPPL++ G D+ + L ++S + +PL+ V
Sbjct: 173 YPPLATQ--DEGLGSDIWLLGLSFIEVASIAAAVELIVGVLKCRPPGMRVNLMPLYAWYV 230
Query: 557 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVY 724
+ + +R + FFDP GGDP+L+QHLF FGHPEVY
Sbjct: 231 LVVGGMILFAFPPLIAGDLLFEMERGFDWPFFDPERGGDPLLWQHLFWIFGHPEVY 286
>UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Aedes
cretinus|Rep: Cytochrome c oxidase subunit I - Aedes
cretinus
Length = 153
Score = 67.3 bits (157), Expect = 4e-10
Identities = 35/65 (53%), Positives = 38/65 (58%)
Frame = +2
Query: 245 LXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVD 424
L GAP AFPR + F +VENGAGTG TVYPPLSS AH G SVD
Sbjct: 1 LMLGAPDMAFPRMNNMSFWMLPPSLTLLLSSSMVENGAGTGWTVYPPLSSGTAHAGASVD 60
Query: 425 LAIFS 439
LAI+S
Sbjct: 61 LAIYS 65
Score = 59.7 bits (138), Expect = 7e-08
Identities = 29/56 (51%), Positives = 32/56 (57%)
Frame = +1
Query: 544 CMSCRDYSXXXXXXTTCFSWSYYNIINRSKLKYIIF*SCWRRRPNFISTFILIFWT 711
CM C +Y TCFS S+Y IIN K KY IF W P +STFILIFWT
Sbjct: 97 CMICCNYCYFITSFFTCFSSSHYYIINWPKSKYFIFWPNWSSSPYSLSTFILIFWT 152
>UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit I;
n=1; Candidatus Carsonella ruddii PV|Rep: Cytochrome O
ubiquinol oxidase subunit I - Carsonella ruddii (strain
PV)
Length = 606
Score = 66.1 bits (154), Expect = 8e-10
Identities = 61/241 (25%), Positives = 89/241 (36%), Gaps = 4/241 (1%)
Frame = +2
Query: 14 YST--NHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGSLIG--DDQIYDTIVTAHAX 181
YST NHK IG +Y I G + LLIR + +G + Y I TAH
Sbjct: 44 YSTTFNHKKIGKIYLIISFLMMFRGLTDALLIRLQQILCYKHLGFLSNHHYCQIFTAHGD 103
Query: 182 XXXXXXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENGAG 361
N ++PL G+ AFP + F I+ A
Sbjct: 104 IMIFFVAMPMIIGIM-NIIIPLQIGSKDVAFPSLNLLSFWLTFFSVLLINISLIIGEFAK 162
Query: 362 TG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPL 541
TG YPPLS VD +S+ ++GI + F+++ +
Sbjct: 163 TGWLGYPPLSEKTFSPWVGVDYWNWSIQISGIGTIISSINFITTILKLRKKKLFFNKISI 222
Query: 542 FV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEV 721
F+ + + + DR L+T F+ GG +LY +L +GHPEV
Sbjct: 223 FMWTCLCSNILILISFPILTILLFQIFLDRTLSTHFYSSFYGGQQMLYINLIWAWGHPEV 282
Query: 722 Y 724
Y
Sbjct: 283 Y 283
>UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3;
Proteobacteria|Rep: Cytochrome-c oxidase - Nitrosomonas
eutropha (strain C71)
Length = 703
Score = 65.7 bits (153), Expect = 1e-09
Identities = 59/238 (24%), Positives = 87/238 (36%), Gaps = 2/238 (0%)
Frame = +2
Query: 17 STNHKDIGTLYFIFGIXSXIXGTSLRLLIRAE--LGNPGSLIGDDQIYDTIVTAHAXXXX 190
ST+HK IG +Y + + + +L+RA+ +G G + D + + + H
Sbjct: 73 STDHKKIGIMYVVLALVMLTRAIAEAVLMRAQGAVGLGGGFLSSDH-FAQLFSTHGTIMI 131
Query: 191 XXXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENGAGTG* 370
N +VPL GA AFP I +V + G
Sbjct: 132 FFMAMPFLTGLI-NYVVPLQIGARDVAFPILNSISLWLTAAGAALVMISLVVGAFSTGGW 190
Query: 371 TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV* 550
YPP + + + G VD I+SL LA + S +PLF
Sbjct: 191 FGYPPYTETLYNPGIGVDYWIWSLTLASLGSTLTGINIAVTIYKKRAPGMKLYYMPLFTW 250
Query: 551 AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVY 724
TA L DR L+ FF GG+ + + ++F FGHPEVY
Sbjct: 251 TALCTAIMMIFAMPPLTVVTLQLALDRYLDFHFFTNGLGGNQMNFLNMFWLFGHPEVY 308
>UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48;
Oligohymenophorea|Rep: Cytochrome c oxidase subunit 1 -
Tetrahymena pyriformis
Length = 698
Score = 65.7 bits (153), Expect = 1e-09
Identities = 43/123 (34%), Positives = 58/123 (47%), Gaps = 3/123 (2%)
Frame = +2
Query: 365 G*TVYPPLSSNIAHRG-RSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQ--L 535
G T P SSNI + G S D+ I S+ AGIS+ + +
Sbjct: 283 GWTFITPFSSNIKYTGVGSQDILILSVVFAGISTTISFTNLLITRRTLAMPGMRHRRVLM 342
Query: 536 PLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHP 715
P ++ +T A+ ++ DR+ T+FF+ A GGDPIL QHLF FFGHP
Sbjct: 343 PFVTISIFLTLRMLATITPVLGAAVIMMAFDRHWQTTFFEYAYGGDPILSQHLFWFFGHP 402
Query: 716 EVY 724
EVY
Sbjct: 403 EVY 405
Score = 54.8 bits (126), Expect = 2e-06
Identities = 32/101 (31%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
Frame = +2
Query: 2 RKXIYSTNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGSLI--GDDQIYDTIVTAH 175
+K +Y+ NHK I Y F + + + G +L +IR EL +P S GD Y +VTAH
Sbjct: 52 KKYVYTINHKRIAINYLYFSMVTGLSGAALATMIRMELAHPESPFFKGDSLRYLQVVTAH 111
Query: 176 AXXXXXXXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXF 298
N L+P G+ A+PR I F
Sbjct: 112 GLIMVFFVVVPILFGGFANFLIPYHVGSKDVAYPRLNSIGF 152
>UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1;
Planctomyces maris DSM 8797|Rep: Cytochrome c oxidase
subunit I - Planctomyces maris DSM 8797
Length = 606
Score = 64.5 bits (150), Expect = 3e-09
Identities = 64/268 (23%), Positives = 94/268 (35%), Gaps = 28/268 (10%)
Frame = +2
Query: 5 KXIYSTNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGS---LIG-----------D 142
K I+ST+HK I + + I G +L L +R +L P ++G
Sbjct: 29 KYIFSTDHKIIAIQFLFTTLLMMIVGGALALAVRWQLAFPWESMPIVGPWLFAAEGGQIS 88
Query: 143 DQIYDTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXX 322
+ Y + T HA N L+PL GA AFP+ + +
Sbjct: 89 PEFYTMLFTMHATVMIFLVIIPILAGMFGNFLIPLMIGADDMAFPKLNMLSYWFMWPAIA 148
Query: 323 XXXXXXIVENGAGTG*TVYP---PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXX 493
G G T YP L+ G + + + G SS
Sbjct: 149 CFGMSFKYAGGPAAGWTSYPVLADLAQAAPGSGTAQTYWLLGVTFVGFSSMMGSINYMTT 208
Query: 494 XXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAG--- 664
+F +LP+ + + ITA + + DR T FF P+G
Sbjct: 209 IINMRAPGMTFFRLPMTIWGLFITAILQAFALPVLTAGGFMQVADRLFGTCFFYPSGLVI 268
Query: 665 --------GGDPILYQHLF*FFGHPEVY 724
GG P+L+QHLF F+ HP VY
Sbjct: 269 NNAAPTVGGGQPLLWQHLFWFYSHPAVY 296
>UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2;
Acidobacteria|Rep: Cytochrome-c oxidase - Acidobacteria
bacterium (strain Ellin345)
Length = 595
Score = 63.7 bits (148), Expect = 4e-09
Identities = 71/272 (26%), Positives = 103/272 (37%), Gaps = 31/272 (11%)
Frame = +2
Query: 2 RKXIYSTNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGSLI------------GD- 142
RK ++S +HK IG Y+ + + G L L+R L P S I GD
Sbjct: 21 RKYVFSLDHKVIGLQYYGLAVVAVFIGMVLSWLMRIHLVWPNSPIPGLHLLSKNGAPGDV 80
Query: 143 --DQIYDTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXX 316
+ Y +++T H N +P+ GA AFPR + F
Sbjct: 81 MTPEYYLSLLTMHGTLMVFFVLTNAPFAAFGNYFLPIQIGAEDMAFPRFNMMSFWTTFAA 140
Query: 317 XXXXXXXXIVENGAG-TG*TVYPPLSS--NIAHRGRSVDLAIFSLHLA--GISSXXXXXX 481
+ +G +G T Y LS+ A G + ++ + +A I+S
Sbjct: 141 FCVLIAAFFIPDGPPISGWTAYATLSAVGGDAGPGMAYGQTLWGISIAIFCIASLLGSLN 200
Query: 482 XXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPA 661
S ++P+ A IT+ A +L DR TSFF P+
Sbjct: 201 FIATTLDLRTKGMSLMRMPICTWAWFITSCIALLAFAVLLPACILLCLDRVAGTSFFIPS 260
Query: 662 G-----------GGDPILYQHLF*FFGHPEVY 724
G GG +L+QHLF FFGHPEVY
Sbjct: 261 GLVFNDHVIPHGGGSALLWQHLFWFFGHPEVY 292
>UniRef50_Q9B6E2 Cluster: Cytochrome c oxidase subunit I; n=2;
Yarrowia lipolytica|Rep: Cytochrome c oxidase subunit I
- Yarrowia lipolytica (Candida lipolytica)
Length = 399
Score = 61.3 bits (142), Expect = 2e-08
Identities = 29/61 (47%), Positives = 41/61 (67%), Gaps = 2/61 (3%)
Frame = +2
Query: 2 RKXIYSTNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGS--LIGDDQIYDTIVTAH 175
++ ++STN KDI LYFIF + S + GT L +IR EL N GS L G+ Q ++ ++TAH
Sbjct: 8 QRWLFSTNAKDIAVLYFIFALFSAMIGTGLSAIIRLELANTGSPFLHGNTQAFNVVITAH 67
Query: 176 A 178
A
Sbjct: 68 A 68
>UniRef50_Q85HI4 Cluster: Cytochrome c oxidase subunit I; n=7;
Echinoida|Rep: Cytochrome c oxidase subunit I -
Echinometra oblonga
Length = 386
Score = 60.5 bits (140), Expect = 4e-08
Identities = 25/31 (80%), Positives = 27/31 (87%)
Frame = +2
Query: 632 NLNTSFFDPAGGGDPILYQHLF*FFGHPEVY 724
N T+FFDPAGGGD IL+QHLF FFGHPEVY
Sbjct: 191 NYYTTFFDPAGGGDXILFQHLFXFFGHPEVY 221
>UniRef50_Q5P1W4 Cluster: Cytochrome c oxidase, subunit I; n=13;
Bacteria|Rep: Cytochrome c oxidase, subunit I - Azoarcus
sp. (strain EbN1) (Aromatoleum aromaticum (strain EbN1))
Length = 607
Score = 60.1 bits (139), Expect = 5e-08
Identities = 53/234 (22%), Positives = 82/234 (35%)
Frame = +2
Query: 23 NHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGSLIGDDQIYDTIVTAHAXXXXXXXX 202
N+ IG Y + + L++R +L + +Y+ + T H
Sbjct: 97 NNNYIGVFYVGAAFLFFVLAGIVALMMRTQLAVAENDFIGPALYNQLFTMHGTVMMFLFA 156
Query: 203 XXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXXXXXXIVENGAGTG*TVYP 382
L+P GA FPR F V G + P
Sbjct: 157 VPAVEAMGIL-LLPNMLGARDLPFPRLSAYAFWAYLVGGLVFFASIFVGWAPDGGWFMNP 215
Query: 383 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 562
PL++ G + D + + IS+ + ++P+F A+ +
Sbjct: 216 PLTTETYSPGYNADFWLLGIGFIEISAIAGAIEIIVGILRTRSPGMTLGRMPVFAWAMLV 275
Query: 563 TAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVY 724
A A +L +R + FF GGDP+L+QHLF FFGHPEVY
Sbjct: 276 FALMIVFAFPAVILATALLELERAFHWPFFAAHLGGDPLLWQHLFWFFGHPEVY 329
>UniRef50_Q35062 Cluster: CoxI intron2 ORF; n=2; Marchantia
polymorpha|Rep: CoxI intron2 ORF - Marchantia polymorpha
(Liverwort)
Length = 802
Score = 59.7 bits (138), Expect = 7e-08
Identities = 27/54 (50%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Frame = +2
Query: 2 RKXIYSTNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGSLI--GDDQIYD 157
++ ++STNHKDIGTLY IFG + + GT +LIR EL PG+ I G+ Q+Y+
Sbjct: 6 QRWLFSTNHKDIGTLYLIFGAIAGVMGTCFSVLIRMELAQPGNQILGGNHQLYN 59
>UniRef50_P03876 Cluster: Putative COX1/OXI3 intron 2 protein; n=2;
Saccharomycetaceae|Rep: Putative COX1/OXI3 intron 2
protein - Saccharomyces cerevisiae (Baker's yeast)
Length = 854
Score = 59.7 bits (138), Expect = 7e-08
Identities = 28/61 (45%), Positives = 41/61 (67%), Gaps = 2/61 (3%)
Frame = +2
Query: 2 RKXIYSTNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGS--LIGDDQIYDTIVTAH 175
++ +YSTN KDI LYF+ I S + GT++ L+IR EL PGS L G+ Q+++ +V H
Sbjct: 3 QRWLYSTNAKDIAVLYFMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGH 62
Query: 176 A 178
A
Sbjct: 63 A 63
>UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1;
Myrmarachne sp. G FSC-2006|Rep: Cytochrome c oxidase
subunit I - Myrmarachne sp. G FSC-2006
Length = 129
Score = 59.3 bits (137), Expect = 9e-08
Identities = 28/41 (68%), Positives = 31/41 (75%)
Frame = +2
Query: 341 IVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 463
+VE G G G TVYPPL+S + H G SVD AIFSLHLAG SS
Sbjct: 12 MVEMGVGAGWTVYPPLASVVGHGGSSVDFAIFSLHLAGASS 52
>UniRef50_Q0R4Y4 Cluster: Maturase-like protein; n=2; Eukaryota|Rep:
Maturase-like protein - Pellia epiphylla
Length = 843
Score = 56.8 bits (131), Expect = 5e-07
Identities = 26/54 (48%), Positives = 37/54 (68%), Gaps = 2/54 (3%)
Frame = +2
Query: 2 RKXIYSTNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGSLI--GDDQIYD 157
++ ++STNHKDIGT Y IFG + + GT +LIR EL PG+ I G+ Q+Y+
Sbjct: 6 QRWLFSTNHKDIGTPYLIFGAIAGVMGTCFSVLIRMELAQPGNQILGGNHQLYN 59
>UniRef50_P03877 Cluster: Intron-encoded DNA endonuclease aI3
precursor (DNA endonuclease I- SceIII) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI3 (EC 3.1.-.-) (Intron-encoded
endonuclease I-SceIII)]; n=5; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI3 precursor (DNA
endonuclease I- SceIII) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI3 (EC 3.1.-.-) (Intron-encoded endonuclease I-SceIII)]
- Saccharomyces cerevisiae (Baker's yeast)
Length = 403
Score = 54.8 bits (126), Expect = 2e-06
Identities = 26/57 (45%), Positives = 39/57 (68%), Gaps = 2/57 (3%)
Frame = +2
Query: 2 RKXIYSTNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGS--LIGDDQIYDTIV 166
++ +YSTN KDI LYF+ I S + GT++ L+IR EL PGS L G+ Q+++ +V
Sbjct: 3 QRWLYSTNAKDIAVLYFMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLV 59
>UniRef50_O99652 Cluster: Cytochrome c oxidase subunit I; n=1;
Tetragona dorsalis ziegleri|Rep: Cytochrome c oxidase
subunit I - Tetragona dorsalis ziegleri
Length = 111
Score = 54.0 bits (124), Expect = 4e-06
Identities = 28/65 (43%), Positives = 37/65 (56%)
Frame = +2
Query: 527 DQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FF 706
DQ+ LF ++ IT AG IT+LL+DRN N FF GG PIL+Q++ F
Sbjct: 12 DQINLFSWSISITVNLSILSLPMLAGTITMLLSDRNFNKFFFILIGGEYPILHQYMLWLF 71
Query: 707 GHPEV 721
GH +V
Sbjct: 72 GHTDV 76
>UniRef50_Q2N1P8 Cluster: Cytochrome c oxidase subunit I; n=2;
Eutetramorium sp. BLF m1|Rep: Cytochrome c oxidase
subunit I - Eutetramorium sp. BLF m1
Length = 201
Score = 53.6 bits (123), Expect = 5e-06
Identities = 24/45 (53%), Positives = 34/45 (75%)
Frame = +2
Query: 44 LYFIFGIXSXIXGTSLRLLIRAELGNPGSLIGDDQIYDTIVTAHA 178
LYFIF I S + G+S+ +LIR EL GS++ +QIY+T+VT+HA
Sbjct: 2 LYFIFAIWSGLIGSSMSMLIRLELETCGSVLRSEQIYNTLVTSHA 46
Score = 37.1 bits (82), Expect = 0.44
Identities = 27/78 (34%), Positives = 35/78 (44%)
Frame = +2
Query: 410 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 589
G L IFSL + S + D++ L ++ ITA
Sbjct: 124 GSXXXLXIFSLXIXXXSXIFSAXNFISXIINMRHTMLTMDKISLLSWSILITAVLLLLSL 183
Query: 590 XXXAGAITILLTDRNLNT 643
AGAIT+LLTDRN+NT
Sbjct: 184 PVLAGAITMLLTDRNMNT 201
>UniRef50_A5FXH8 Cluster: Cytochrome-c oxidase; n=1; Acidiphilium
cryptum JF-5|Rep: Cytochrome-c oxidase - Acidiphilium
cryptum (strain JF-5)
Length = 689
Score = 53.2 bits (122), Expect = 6e-06
Identities = 58/252 (23%), Positives = 91/252 (36%), Gaps = 11/252 (4%)
Frame = +2
Query: 2 RKXIYSTNHKDIGTLYFIFGIXSXIXGTSLRLLIRAEL------GNPGSLIGDDQI---- 151
R+ + + +HK IG +Y I G+ G L+IR + +PG L
Sbjct: 57 REWLTTLDHKKIGVMYVIVGLVMMFRGFIDGLMIRTQQMMADGPHSPGHLQALHGYLPPF 116
Query: 152 -YDTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLXXGAPXXAFPRXXXIXFXXXXXXXXXX 328
+D I ++H N +VPL GA AFP +
Sbjct: 117 HFDQIYSSHGVIMILLAVTPLLTGLS-NIIVPLQIGARDMAFPYLNAVGLWLTAVAAALV 175
Query: 329 XXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXX 508
V + + G PL+ G VD ++++ + + +
Sbjct: 176 MLSLFVGDFSHDGWIGLIPLTELPYSPGVGVDYWMWAIQIGSVGTTLNAINMIATIVKLR 235
Query: 509 XXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQ 688
++ +LP V T A+ +L DR L T FF GG+ +LY
Sbjct: 236 APGMTWSRLPFVVWTSLTTNIIALTAFPILGVALAMLGADRYLGTHFFTAGLGGNLMLYT 295
Query: 689 HLF*FFGHPEVY 724
+LF +GHPEVY
Sbjct: 296 NLFWIWGHPEVY 307
>UniRef50_P03875 Cluster: Putative COX1/OXI3 intron 1 protein; n=1;
Saccharomyces cerevisiae|Rep: Putative COX1/OXI3 intron
1 protein - Saccharomyces cerevisiae (Baker's yeast)
Length = 834
Score = 52.8 bits (121), Expect = 8e-06
Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Frame = +2
Query: 2 RKXIYSTNHKDIGTLYFIFGIXSXIXGTSLRLLIRAELGNPGS--LIGDDQIYDTIVTA 172
++ +YSTN KDI LYF+ I S + GT++ L+IR EL PGS L G+ Q+++ T+
Sbjct: 3 QRWLYSTNAKDIAVLYFMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNGAPTS 61
>UniRef50_Q7YI87 Cluster: Cytochrome oxidase subunit I; n=1;
Celatoblatta vulgaris|Rep: Cytochrome oxidase subunit I
- Celatoblatta vulgaris
Length = 134
Score = 48.0 bits (109), Expect = 2e-04
Identities = 25/51 (49%), Positives = 29/51 (56%)
Frame = +1
Query: 547 MSCRDYSXXXXXXTTCFSWSYYNIINRSKLKYIIF*SCWRRRPNFISTFIL 699
M C +YS +TC WSYYN IN SKLKYI+F F+ST IL
Sbjct: 84 MICSNYSFTIIIVSTCSCWSYYNTINWSKLKYILFWPSSSWGSYFMSTPIL 134
>UniRef50_Q6XYE8 Cluster: Cytochrome c oxidase subunit I; n=2;
Endopterygota|Rep: Cytochrome c oxidase subunit I -
Copitarsia incommoda
Length = 150
Score = 41.1 bits (92), Expect = 0.027
Identities = 20/31 (64%), Positives = 21/31 (67%)
Frame = +1
Query: 631 KLKYIIF*SCWRRRPNFISTFILIFWTS*SL 723
K KYIIF S W F+STFILIFWT SL
Sbjct: 7 KFKYIIFWSSWSSWSYFMSTFILIFWTPSSL 37
>UniRef50_Q8II85 Cluster: Putative uncharacterized protein; n=2;
Plasmodium|Rep: Putative uncharacterized protein -
Plasmodium falciparum (isolate 3D7)
Length = 1420
Score = 32.7 bits (71), Expect = 9.4
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -2
Query: 630 RSVNNIVIAPAKTGSDNNNKNAVIPTAHTNKGN*SNDILFN 508
+++NN +I S NNN N++ T TN + +N+I +N
Sbjct: 1038 KTINNNIINDTSQSSYNNNMNSIQNTNRTNSSSSNNNISYN 1078
>UniRef50_Q2ABI9 Cluster: NADH-ubiquinone oxidoreductase chain 2;
n=21; Neocoleoidea|Rep: NADH-ubiquinone oxidoreductase
chain 2 - Sepia officinalis (Common cuttlefish)
Length = 375
Score = 32.7 bits (71), Expect = 9.4
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 22 KS*RYWNVIFYFWYXIXNXWNIFKTFNS 105
KS YWN++F+FWY I ++ K NS
Sbjct: 344 KSQSYWNIMFHFWYLISFISHLAKINNS 371
>UniRef50_Q5ABE2 Cluster: Putative uncharacterized protein CLN3;
n=1; Candida albicans|Rep: Putative uncharacterized
protein CLN3 - Candida albicans (Yeast)
Length = 785
Score = 32.7 bits (71), Expect = 9.4
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = -2
Query: 684 YKIGSPPPAGSKNDVFKFRSVNN---IVIAPAKTGSDNNNKNAVIPTAH 547
Y++ +PP + +KN K S NN IA T ++NNN N+ +P H
Sbjct: 572 YQMVTPPNSANKNSN-KSNSANNNNTTTIATTTTTTNNNNNNSQLPAPH 619
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 467,786,203
Number of Sequences: 1657284
Number of extensions: 6910851
Number of successful extensions: 16782
Number of sequences better than 10.0: 107
Number of HSP's better than 10.0 without gapping: 15259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16499
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58677691418
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -