Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4a04
         (286 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.13c |pts1||20S proteasome component beta 5|Schizosacchar...    25   2.8  
SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po...    24   3.7  
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    23   6.5  

>SPAC4A8.13c |pts1||20S proteasome component beta
           5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 272

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 11/46 (23%), Positives = 22/46 (47%)
 Frame = -1

Query: 190 NIMQQQGGLLVELGHHSVTNL*AIEGGAINFYERVRNNWIVITQFN 53
           ++ +Q+   L +    + T+  A  GG++N Y    N W+    F+
Sbjct: 207 DLSKQEALYLAQRSIVAATHRDAYSGGSVNLYHIDENGWVFHGNFD 252


>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 596

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -1

Query: 193 QNIMQQQGGLLVELGHHSVTNL*AIEGGAINFYE 92
           + +  + GGLL E GH    N+    G  +  YE
Sbjct: 446 KQVYDRYGGLLEEFGHEYHVNVTLFNGETVVEYE 479


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
            1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 197  SSKYNATTRRTSGRTWPPFRY*FMSD*RRRN 105
            SSK +  + R S RT PP ++  + D R  N
Sbjct: 971  SSKASRLSARPSARTVPPLQHISIQDLREPN 1001


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,047,934
Number of Sequences: 5004
Number of extensions: 16709
Number of successful extensions: 37
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 65671360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)