Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4a04
         (286 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    23   0.97 
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    21   3.0  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          20   5.2  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      20   5.2  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    19   9.0  

>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 22.6 bits (46), Expect = 0.97
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
 Frame = -3

Query: 275 LCIFLFNISSKYPLYNSFCP------TIDTMCSSKYNATTRRTSGRTWPPFR 138
           LC+    I+SK PL +  CP      +   MC  K + T   T+     PF+
Sbjct: 46  LCLPAPRINSKSPLLSCACPDGLKLLSDGLMCVEKVSTTIVPTTQEINKPFK 97


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 275 LCIFLFNISSKYPLYNSFCP 216
           LC+    I+SK PL +  CP
Sbjct: 46  LCLPAPRINSKSPLLSCACP 65


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 20.2 bits (40), Expect = 5.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 281 FLLCIFLFNISSKYPLYNS 225
           F L +++  +SS+Y  YNS
Sbjct: 616 FQLFLYVSPVSSEYNQYNS 634


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 20.2 bits (40), Expect = 5.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 281 FLLCIFLFNISSKYPLYNS 225
           F L +++  +SS+Y  YNS
Sbjct: 616 FQLFLYVSPVSSEYNQYNS 634


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 216 NDRYNVFIKI*CNNKADFW*NLATIPLLI 130
           ND  NV   I  N+K +    L T+PLLI
Sbjct: 76  NDVLNVLYFINKNDKYEENTILTTMPLLI 104


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,601
Number of Sequences: 438
Number of extensions: 1440
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5619645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)