Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4a02
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    30   0.38 
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    28   1.2  
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    27   2.0  
SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.2  
SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p...    25   8.2  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    25   8.2  

>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 558  RTHRSDEIERIFQINLEDLRLLVAKEYCNLIMGDGEFKKYHHMGL 692
            RT+ +  +E +  + +E  R  + KE  N+I  DG +  Y H+ L
Sbjct: 1332 RTYSNSFVEILQILGIEATRSALLKELRNVIEFDGSYVNYRHLAL 1376


>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 21/56 (37%), Positives = 28/56 (50%)
 Frame = +3

Query: 384 LVLYTAPLKMLISAPATVNVLHLRATHRFLRALIFYCQYYLQTSDEMSKRSLELEA 551
           L L    LK L++A     ++ LR     L  L+F  QY L+T   MSKR L  +A
Sbjct: 667 LYLSVLELKNLVNANRENILMQLRKAA--LHQLLFRSQYNLETLSLMSKRILREDA 720


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
 Frame = +3

Query: 351 TDVVTVQDIKDLVLYTAPLKMLI-----SAPATVNVLHLRATHRFLRALIFY 491
           T V+ V+ +KD  L TA  +  I     SA   +N+ HL  TH+ L +L F+
Sbjct: 527 TRVIMVKKLKDKDL-TAENRRYIQLCVESATRVINIAHLLLTHKCLSSLSFF 577


>SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 96

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +3

Query: 438 NVLHLRATHRFLRALIFYCQYYLQ--TSDEMSKRSLEL 545
           NVL +R T   L A+ ++C + LQ  ++   SK  L++
Sbjct: 5   NVLTIRCTFHVLFAICYFCDHLLQYISNSRDSKAGLKI 42


>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 147 NFESLFEDGHWEWDE 191
           N+ S F+   WEWDE
Sbjct: 152 NWRSYFDTSAWEWDE 166


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = +3

Query: 519 EMSKRSLELEAKIRTHRSDEIERIFQINL 605
           E+SK+  E E KIR+  +D+IE+  +IN+
Sbjct: 737 ELSKKLFE-ERKIRSGSNDDIEKNKEINV 764


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,459,961
Number of Sequences: 5004
Number of extensions: 45633
Number of successful extensions: 112
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)