Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte4a02
(716 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0594 - 18831011-18831360,18831562-18832111,18832364-188334... 30 1.6
10_01_0330 + 3614562-3614574,3614676-3615118,3617700-3617825,361... 29 2.8
09_02_0348 - 7616686-7616802,7616888-7617176,7617259-7617429,761... 29 2.8
06_03_1130 - 27826384-27827039,27827800-27828031,27828120-278284... 29 3.7
05_04_0369 - 20691100-20691235,20691318-20691488,20691540-206919... 29 3.7
12_02_1085 - 25935688-25935948,25936589-25936657,25937244-259373... 29 4.9
11_04_0166 + 14317129-14317962,14318042-14318809,14319008-143197... 29 4.9
10_05_0056 + 8635567-8635782,8636275-8637006,8637088-8637531,863... 29 4.9
04_03_0365 - 14950398-14950880,14950967-14951262,14951277-149514... 29 4.9
04_01_0347 - 4546566-4546604,4546710-4546748,4546834-4547059,454... 29 4.9
10_07_0171 + 13792362-13793078,13793157-13793517,13793691-137939... 28 8.5
06_02_0129 + 12151133-12151840,12151919-12152365,12152453-121533... 28 8.5
>09_04_0594 -
18831011-18831360,18831562-18832111,18832364-18833406,
18833496-18833760,18835194-18835340,18835431-18835511,
18835626-18835804,18835935-18836093,18836269-18836398,
18836935-18837094,18837337-18837419,18837865-18837915,
18838035-18838151,18838273-18838359
Length = 1133
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/58 (22%), Positives = 33/58 (56%)
Frame = +3
Query: 540 ELEAKIRTHRSDEIERIFQINLEDLRLLVAKEYCNLIMGDGEFKKYHHMGLSKKTRSL 713
ELEA + TH+S ++ ++++N+ D+ ++ C +++ D ++ +K ++L
Sbjct: 288 ELEAYMETHKSVMVDSLWKLNVADIEGTLS-HVCQMVLQDSTIRREELRARAKGLKTL 344
>10_01_0330 +
3614562-3614574,3614676-3615118,3617700-3617825,
3618379-3618786,3618871-3619311,3619399-3619779
Length = 603
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 489 YCQYYLQTSDEMSKRSLELEAKIRTHRSDEIERIFQINLEDLRLLVAKE 635
Y Y + + +++ LEAKIR E+ F NLE +R + +E
Sbjct: 380 YAWQYKKWTSNKAEKDARLEAKIRASIRAELTSEFDENLESMRAKIRQE 428
>09_02_0348 -
7616686-7616802,7616888-7617176,7617259-7617429,
7617508-7617680,7617789-7618394,7618482-7618793,
7619007-7619032,7619077-7619191
Length = 602
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 489 YCQYYLQTSDEMSKRSLELEAKIRTHRSDEIERIFQINLEDLRLLVAKE 635
Y Y + + + +K+ LEAKIR E+ F LE +R + +E
Sbjct: 54 YAWQYKKRTSKKAKKDARLEAKIRASIRAELTSEFDEKLESMRAKIRQE 102
>06_03_1130 - 27826384-27827039,27827800-27828031,27828120-27828491,
27829243-27829449,27829611-27829704,27829806-27829870,
27829946-27830398,27830467-27830760,27830837-27831295,
27831367-27831588,27831755-27831968,27832039-27832494,
27833280-27833389,27833468-27833644,27833758-27833979,
27834048-27834167,27834274-27834383,27834552-27834607,
27835252-27835440,27835602-27835775,27836066-27836281,
27837066-27837106,27837971-27837986,27838330-27838415,
27838737-27838910,27839093-27839149,27839720-27840064,
27840175-27840216,27840377-27840496,27840575-27840724,
27840830-27841534,27841609-27841954,27842978-27843080,
27844817-27844860,27845905-27846101,27846322-27846344,
27846802-27847122,27847406-27847579,27847843-27848047,
27848817-27848880,27850097-27850278,27850291-27850350,
27850688-27850748,27851249-27851313,27851491-27851569,
27851656-27852021,27852442-27852790,27852887-27852989,
27853103-27853373,27854296-27854405,27854515-27854652
Length = 3364
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = +3
Query: 396 TAPLKMLISAPATVNVLHLRATHRFLRALIFYCQYYLQTSDEMSKR 533
T+P+K+++ +N+ L + +RF ++ YLQ+ + S R
Sbjct: 1887 TSPIKVILPTSCHINISFLPSYYRFTSVILVCIFRYLQSCQDSSAR 1932
>05_04_0369 -
20691100-20691235,20691318-20691488,20691540-20691940,
20692084-20692452,20692540-20692986,20693065-20693772
Length = 743
Score = 29.1 bits (62), Expect = 3.7
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +3
Query: 495 QYYLQTSDEMSKRSLELEAKIRTHRSDEIERIFQINLEDLRLLVAKE 635
QY QTS++ K + LEAKIR E+ F LE +R + +E
Sbjct: 291 QYKKQTSNKAEKDA-HLEAKIRASIRAELTSEFDEKLESMRAKIRQE 336
>12_02_1085 -
25935688-25935948,25936589-25936657,25937244-25937315,
25937693-25937791,25937927-25938007,25938099-25938586,
25938728-25938857,25939994-25940239
Length = 481
Score = 28.7 bits (61), Expect = 4.9
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Frame = +3
Query: 90 PRFIYKMIGA-------YSSNYDNDENFESLFEDGHWEWDENVMQLVFTSDRPRRESSY 245
P F+ M+GA YSS Y N E + ED W + + SD P+R S+
Sbjct: 406 PSFMVNMVGADRMSQRSYSSRYPFSLNAEMIPEDEFELWLQQALASGVFSDSPKRRKSW 464
>11_04_0166 + 14317129-14317962,14318042-14318809,14319008-14319740,
14353399-14353892,14353971-14354417,14354505-14355110,
14355204-14355391,14355470-14355640,14355723-14355810
Length = 1442
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +3
Query: 495 QYYLQTSDEMSKRSLELEAKIRTHRSDEIERIFQINLEDLRLLVAKE 635
QY QTS++ K + LEAKIR E+ F LE +R + +E
Sbjct: 998 QYKKQTSNKAEKDA-RLEAKIRESIRAELTSEFDEKLESMRAKIRQE 1043
>10_05_0056 +
8635567-8635782,8636275-8637006,8637088-8637531,
8637618-8637665,8637706-8638505,8638584-8638754,
8638837-8639125,8639211-8639249,8639355-8639393
Length = 925
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +3
Query: 495 QYYLQTSDEMSKRSLELEAKIRTHRSDEIERIFQINLEDLRLLVAKE 635
QY +TS++ K + LEAKIR E+ F LE +R + KE
Sbjct: 370 QYKKRTSNKAEKDA-RLEAKIRESIRAELTSEFDEKLESMRAKIRKE 415
>04_03_0365 -
14950398-14950880,14950967-14951262,14951277-14951413,
14951562-14952039,14952203-14952215
Length = 468
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +3
Query: 489 YCQYYLQTSDEMSKRSLELEAKIRTHRSDEIERIFQINLEDLRLLVAKE 635
Y Y + S +++ LEAKIR E+ F LE +R + +E
Sbjct: 211 YAWQYKKRSSNKAEKDARLEAKIRASIRAELTSEFDKKLESMRAKIRQE 259
>04_01_0347 -
4546566-4546604,4546710-4546748,4546834-4547059,
4547222-4547374,4547453-4547706,4547734-4548366,
4548453-4548899,4548978-4549277,4549386-4549697,
4550190-4550243
Length = 818
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +3
Query: 489 YCQYYLQTSDEMSKRSLELEAKIRTHRSDEIERIFQINLEDLRLLVAKE 635
Y Y + S +++ LEAKIR E+ F LE +R + +E
Sbjct: 274 YAWQYKKRSSNKAEKDARLEAKIRASIRAELTSEFDEKLESMRAKIRQE 322
>10_07_0171 +
13792362-13793078,13793157-13793517,13793691-13793953,
13797770-13798246
Length = 605
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +3
Query: 495 QYYLQTSDEMSKRSLELEAKIRTHRSDEIERIFQINLEDLRLLVAKE 635
QY +TS+++ K + LEAKIR E+ F LE +R + +E
Sbjct: 294 QYKKRTSNKVEKDA-RLEAKIRESIRAELTSEFDEKLESMRAKIRQE 339
>06_02_0129 +
12151133-12151840,12151919-12152365,12152453-12153339,
12153418-12153588,12153671-12153935,12155208-12155247,
12155846-12155929,12156058-12156167
Length = 903
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +3
Query: 495 QYYLQTSDEMSKRSLELEAKIRTHRSDEIERIFQINLEDLRLLVAKE 635
QY +TS+++ K + LEAKIR E+ F LE +R + +E
Sbjct: 291 QYKKRTSNKVEKDA-RLEAKIRESIRAELTSEFNEKLESMRAKIRQE 336
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,394,362
Number of Sequences: 37544
Number of extensions: 240212
Number of successful extensions: 550
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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