Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4a02
         (716 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)               33   0.18 
SB_1695| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.6  
SB_770| Best HMM Match : DUF837 (HMM E-Value=1.4)                      30   1.6  
SB_46007| Best HMM Match : Borrelia_lipo_2 (HMM E-Value=3.7)           29   3.8  
SB_32934| Best HMM Match : K_tetra (HMM E-Value=7.79963e-42)           29   5.0  
SB_17681| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_7450| Best HMM Match : DUF1324 (HMM E-Value=6.4)                    29   5.0  

>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
          Length = 1467

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 18/66 (27%), Positives = 35/66 (53%)
 Frame = +3

Query: 495 QYYLQTSDEMSKRSLELEAKIRTHRSDEIERIFQINLEDLRLLVAKEYCNLIMGDGEFKK 674
           ++ L+T   +S+R ++    +RT  +D  E    + +E +R  V +E  ++I  DG +  
Sbjct: 153 EWLLETDGVLSERDVD---PVRTTSNDICEIFSVLGIEAVRKAVEREMDHVISFDGSYVN 209

Query: 675 YHHMGL 692
           Y H+ L
Sbjct: 210 YRHLAL 215


>SB_1695| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 248

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +3

Query: 72  YISLFQPRFIYKMIGAYSSNYDNDENFESLFEDGHWEWD 188
           YI L QP+  Y +I  Y+  +    N E+L  D   EWD
Sbjct: 105 YIELDQPQATYDVIDTYNIRHVVSHNVEALILDLMAEWD 143


>SB_770| Best HMM Match : DUF837 (HMM E-Value=1.4)
          Length = 269

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = +3

Query: 117 AYSSNYDNDENFE---SLFEDGHWEWDENVMQLVFTSDR 224
           AY  NYDN+E+ E     F+D   E  E V Q+++ +DR
Sbjct: 150 AYQLNYDNEESAEGQRKSFKDLSSEDQEKVQQILYLADR 188


>SB_46007| Best HMM Match : Borrelia_lipo_2 (HMM E-Value=3.7)
          Length = 187

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 19/59 (32%), Positives = 27/59 (45%)
 Frame = +3

Query: 186 DENVMQLVFTSDRPRRESSYESTLQTTFGPVEFKDNLDLLDELRFRKLFQRKTVETDVV 362
           DE   Q+   SD P+     EST  T+FG ++       L ELR + L     +  DV+
Sbjct: 28  DEASRQVSILSDAPQTPRGQESTSDTSFGSLDQLTAARGLHELRHQYLDTVAKIRDDVL 86


>SB_32934| Best HMM Match : K_tetra (HMM E-Value=7.79963e-42)
          Length = 1207

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 10/40 (25%), Positives = 23/40 (57%)
 Frame = +3

Query: 60   VFFIYISLFQPRFIYKMIGAYSSNYDNDENFESLFEDGHW 179
            +F +++S+  P  ++  +  ++    ND+NF+S+ E   W
Sbjct: 1034 LFLVFVSVMVPIILFSSMIYFAEKDANDKNFQSIPESFWW 1073


>SB_17681| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 366

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 10/40 (25%), Positives = 23/40 (57%)
 Frame = +3

Query: 60  VFFIYISLFQPRFIYKMIGAYSSNYDNDENFESLFEDGHW 179
           +F +++S+  P  ++  +  ++    ND+NF+S+ E   W
Sbjct: 125 LFLVFVSVMVPIILFSSMIYFAEKDANDKNFQSIPESFWW 164


>SB_7450| Best HMM Match : DUF1324 (HMM E-Value=6.4)
          Length = 400

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 23/76 (30%), Positives = 32/76 (42%)
 Frame = +3

Query: 189 ENVMQLVFTSDRPRRESSYESTLQTTFGPVEFKDNLDLLDELRFRKLFQRKTVETDVVTV 368
           EN+       + P      +S   T FGP+E KD+ D  D LR      R  VE   +T 
Sbjct: 180 ENMPYSTGALEYPNSFDDIKSFSPTDFGPLENKDHED--DHLRLELWGLRDAVENGQMTD 237

Query: 369 QDIKDLVLYTAPLKML 416
             +  LV +   L+ L
Sbjct: 238 SALGSLVSHLPELENL 253


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,450,087
Number of Sequences: 59808
Number of extensions: 296058
Number of successful extensions: 636
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)