Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte4a02
         (716 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist...    31   1.1  
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele...    31   1.1  
Z48795-1|CAA88725.1|  372|Caenorhabditis elegans Hypothetical pr...    25   5.2  

>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
            protein 1 protein.
          Length = 1852

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 555  IRTHRSDEIERIFQINLEDLRLLVAKEYCNLIMGDGEFKKYHHMGL 692
            +RT  +D  E    + +E +R  + +E  N+I  DG +  Y H+ L
Sbjct: 1343 VRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLAL 1388


>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
            RNA polymeraseII largest subunit (ama-1 IV) gene,
            complete cds. ).
          Length = 1859

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 555  IRTHRSDEIERIFQINLEDLRLLVAKEYCNLIMGDGEFKKYHHMGL 692
            +RT  +D  E    + +E +R  + +E  N+I  DG +  Y H+ L
Sbjct: 1350 VRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLAL 1395


>Z48795-1|CAA88725.1|  372|Caenorhabditis elegans Hypothetical
           protein R05H5.2 protein.
          Length = 372

 Score = 24.6 bits (51), Expect(2) = 5.2
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +3

Query: 483 IFYCQYYLQTSDEMSKRSLELEAKIRTHRSDEIE 584
           IFYC+Y       M++R  +++     HR+  ++
Sbjct: 221 IFYCEYSQVRGPAMARRLRKIDTHRNNHRAAALD 254



 Score = 22.2 bits (45), Expect(2) = 5.2
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 420 SAPATVNVLHLRATHRFLRALIFYCQY 500
           S  ATV    LR   R L+ +IF C+Y
Sbjct: 154 SISATVFASLLRDRSRCLQLIIFDCRY 180


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,410,543
Number of Sequences: 27780
Number of extensions: 245608
Number of successful extensions: 713
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)