Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3p21
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    64   1e-11
SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces pombe...    27   2.1  
SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   2.7  
SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|...    26   6.3  
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12...    26   6.3  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    25   8.3  

>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 64.5 bits (150), Expect = 1e-11
 Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 4/98 (4%)
 Frame = +1

Query: 442 LDGTIHAREWISTSVVTYIADHIARSFNT---LPDYITNKDWFFVPVVNPDGYYHTHTVD 612
           + G  HAREWI    V Y A  +   +++   +   +   +W F+PV+N DGY +T + D
Sbjct: 243 IQGGSHAREWIGIPSVCYAAWQLLAKYDSDGHVRKLLDKFEWIFIPVLNVDGYEYTWSND 302

Query: 613 RMWRKNRARFGNT-ITGVDLNRNFGLNWGRNGNTECAS 723
           R+W KNR    N+   G++L+ N+   +G NGN +  S
Sbjct: 303 RLWSKNRQPLNNSECFGINLDANWA--FGFNGNIDPCS 338


>SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 405

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 1/101 (0%)
 Frame = +1

Query: 403 KISNSNARNTAVWLDGTIHAREWISTSVVTYIADHIARSFNTLPDYITNKDWFFVPVVNP 582
           ++++ NA     W  G  HA++    S   Y+ D IA +   L  Y     +  + V + 
Sbjct: 120 ELNSGNAEIAINWAGGLHHAKKR-EASGFCYVND-IALAALELLKYHQRVLYIDIDVHHG 177

Query: 583 DGYYHT-HTVDRMWRKNRARFGNTITGVDLNRNFGLNWGRN 702
           DG     +T DR+   +  +FG    G    ++ G+  G+N
Sbjct: 178 DGVEEFFYTTDRVMTCSFHKFGEYFPGTGHIKDTGIGTGKN 218


>SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 256

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 108 LWLVTDWNFTLITKIYWYF 52
           LW++ D    L+  +YWYF
Sbjct: 76  LWILADPAILLVQSVYWYF 94


>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +3

Query: 144 VKCLKEGQRIFVKSLDTKGAINVCKERHSAMDVIVEGTRTMQVEKLLRE 290
           +K LKE  R      D K   NV    + ++D I+E  RTM+ + L +E
Sbjct: 82  IKALKEPAR------DRKKDKNVAHSGNVSLDEIIEVARTMRFKSLAKE 124


>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +3

Query: 144 VKCLKEGQRIFVKSLDTKGAINVCKERHSAMDVIVEGTRTMQVEKLLRE 290
           +K LKE  R      D K   NV    + ++D I+E  RTM+ + L +E
Sbjct: 82  IKALKEPAR------DRKKDKNVAHSGNVSLDEIIEVARTMRFKSLAKE 124


>SPAC9G1.10c |||inositol polyphosphate phosphatase
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 8/34 (23%), Positives = 20/34 (58%)
 Frame = +1

Query: 457  HAREWISTSVVTYIADHIARSFNTLPDYITNKDW 558
            +A E+   + +TY+ ++ + S+ T   Y++  +W
Sbjct: 1147 YADEFKRKAKITYVMNYTSVSYQTAEQYLSGNNW 1180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,973,294
Number of Sequences: 5004
Number of extensions: 62672
Number of successful extensions: 152
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)