Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3p21
         (725 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1099 - 8700627-8700710,8701148-8701200,8701287-8701344,870...    33   0.31 
08_01_0239 - 1993833-1994114,1994266-1994436,1994541-1994686,199...    31   1.2  
11_06_0237 - 21606240-21606395,21606499-21606706,21607565-216076...    28   6.6  
04_03_0624 - 18115559-18115725,18115993-18116872                       28   6.6  
01_06_1753 - 39664219-39665445                                         28   6.6  
01_01_0323 + 2598850-2598924,2599756-2600844,2601352-2602589,260...    28   6.6  
02_01_0141 + 1017654-1017745,1018332-1018389,1018485-1018595,101...    28   8.7  

>01_01_1099 -
           8700627-8700710,8701148-8701200,8701287-8701344,
           8701886-8702032,8702386-8702448,8702559-8702630,
           8703154-8703234,8703312-8703362,8703519-8703615,
           8704154-8704384,8704882-8705142,8705231-8705394,
           8705547-8705586,8707223-8707323
          Length = 500

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
 Frame = -3

Query: 192 CLSSLQISFDLLLSILPPI----FEISRPYVPLWLVTDWN--FTLITKIY 61
           CL +LQIS DLL  IL PI     ++ R  + L L T W+  +T I  IY
Sbjct: 148 CLVALQISIDLLCPILMPIDLSLIDVPRLPINLLLTTVWDYRYTSIGSIY 197


>08_01_0239 -
           1993833-1994114,1994266-1994436,1994541-1994686,
           1995127-1995182,1995314-1995437,1995527-1995712,
           1995787-1995845,1996413-1996630,1996853-1996966,
           1997339-1997466,1997591-1997650,1998225-1998386,
           1998796-1998883
          Length = 597

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 123 ARFQIWEVKCLKEGQRIFVKSLDTKGAINV 212
           ARFQ + + C  +GQR+    LDT G  N+
Sbjct: 327 ARFQKYIIFCDADGQRVLKHDLDTNGTSNI 356


>11_06_0237 -
           21606240-21606395,21606499-21606706,21607565-21607697,
           21607775-21607904,21607999-21608092,21609258-21609652
          Length = 371

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
 Frame = +1

Query: 493 YIADHIARSFNTLPDYITNKDWFFVPVVNPDGYYHT-HTVDRMWRKNRARFGNTITGVDL 669
           +IA HIAR   +   YI   DW     +  D + H  H VD     N  +     TGVD 
Sbjct: 33  FIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLK---VTTGVDH 89

Query: 670 NRNFGLNWGRNG 705
             N   + G  G
Sbjct: 90  VFNLAADMGGMG 101


>04_03_0624 - 18115559-18115725,18115993-18116872
          Length = 348

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +2

Query: 176 CKELRHQGRYQRMQRTSQC-NGCDSGGYPYNASR 274
           C+E RHQ  Y  +   S C N  +  GY  N S+
Sbjct: 243 CEEARHQANYSCISTYSDCFNSLNGPGYICNCSK 276


>01_06_1753 - 39664219-39665445
          Length = 408

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 185 LRHQGRYQRMQRTSQCNGCDSGGYPYN 265
           ++    Y++ Q     NGC +GGY YN
Sbjct: 220 VKQHATYKQHQAIEGVNGCGAGGYNYN 246


>01_01_0323 + 2598850-2598924,2599756-2600844,2601352-2602589,
            2602637-2602810,2603032-2603098,2603735-2603757,
            2603899-2604001,2604087-2604848,2605098-2605292,
            2605496-2606115,2606429-2606480,2606558-2607197,
            2608366-2608574,2608660-2609189,2609500-2609566,
            2609651-2609728,2610415-2610483,2610569-2610643
          Length = 2021

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -1

Query: 719  AHSVLPFLPQFSPKFLFKSTPVMVFPNRA 633
            A+S+LP  P FS K L K+ P +  P+ A
Sbjct: 1478 ANSILPASPDFSSKSLRKTMPSVQIPSEA 1506


>02_01_0141 +
           1017654-1017745,1018332-1018389,1018485-1018595,
           1018853-1018990,1019559-1019628,1019711-1019766,
           1020203-1020328,1020648-1020787,1020932-1021004,
           1021095-1021169,1021277-1021591
          Length = 417

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = +1

Query: 658 GVDLNRNFGLNWGR 699
           GVDLNRN+ ++WG+
Sbjct: 159 GVDLNRNWSVDWGK 172


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,167,345
Number of Sequences: 37544
Number of extensions: 369977
Number of successful extensions: 908
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)