Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3p20
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    29   0.89 
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    28   1.6  
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    27   3.6  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    26   4.8  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   6.3  
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom...    25   8.3  
SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyce...    25   8.3  

>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 7   WFSIIWCFLNKLKMFS*SNRSTDPHN 84
           WF+II+C  NKLK     + + D HN
Sbjct: 237 WFTIIYCADNKLKAMHMISPTLDAHN 262


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -1

Query: 701 KQHSNQRPPQHR-PHEHSRPVLTPPRDIRIAA 609
           K + +Q+P  H  PH+H +  + PP D  I +
Sbjct: 242 KNNKDQKPKNHEAPHQHPQQKVVPPDDPAIVS 273


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -1

Query: 695 HSNQRPPQHRPHEHSRPVLTPP 630
           H + RPP H PH H      PP
Sbjct: 170 HPHTRPPHHPPHPHFHNNNYPP 191


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -1

Query: 674 QHRPHEHSRPVLTPPRDIRIAAP-TTVLRRTVDRQLDVEHLPSSV 543
           Q  PH HS  +++   D+ IA+P  +     V   L+  H P S+
Sbjct: 169 QSSPHSHSASIISDGSDMDIASPIRSTESDMVSEALNAGHPPPSL 213


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 716 EQRQVKQHSNQRPPQHRPHEHSRPVLTPP 630
           + R+ ++     PPQ    E +RP L PP
Sbjct: 748 KHRETEEEDEGPPPQPARPESTRPALAPP 776


>SPCC63.03 |||DNAJ domain protein, DNAJC11
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -3

Query: 546 GSFTQSLNISTLILKISLARRFCRLISNPMACW 448
           GS T SLN S L  KISL   +C +       W
Sbjct: 416 GSITFSLNWSRLGQKISLPIMWCSVFDRSAVFW 448


>SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -3

Query: 276 SRCMHTAEGGACGRVRQALCTTHGARPAATSDV-TSTCSNI 157
           S C H A     G++R    T HG RP +T DV TS  S++
Sbjct: 220 SLCFHFATITHYGQLR-FYDTKHGRRPVSTFDVSTSPLSHV 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,379,043
Number of Sequences: 5004
Number of extensions: 42935
Number of successful extensions: 107
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)