Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3p20
         (725 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0451 - 29476892-29477516,29477600-29477843,29478313-294787...    33   0.17 
10_03_0007 - 6956215-6956223,6957082-6957300,6957874-6957978,695...    32   0.53 
12_01_0615 + 5072267-5073253                                           30   1.6  
02_01_0377 + 2728892-2729187,2729483-2729544,2730516-2730570,273...    30   2.2  
10_07_0113 - 12993300-12993413,12993493-12993775,12993856-129940...    29   5.0  
04_04_1465 + 33794225-33794389,33794471-33794597,33794669-337947...    29   5.0  
02_05_1312 + 35642687-35642923,35643712-35643831,35644468-356445...    29   5.0  

>01_06_0451 -
           29476892-29477516,29477600-29477843,29478313-29478714,
           29481164-29481358,29481418-29481537,29481615-29481683,
           29481901-29481999,29483857-29483946,29484049-29484180,
           29485062-29485173
          Length = 695

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 14/24 (58%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = -1

Query: 701 KQHSNQRPPQH-RPHEHSRPVLTP 633
           KQHS+  PP H RPH+ S PV++P
Sbjct: 192 KQHSSNLPPSHHRPHKGSFPVISP 215


>10_03_0007 -
           6956215-6956223,6957082-6957300,6957874-6957978,
           6958062-6958175,6958342-6958467,6958583-6958697,
           6958791-6958867,6958956-6959179,6959848-6959953,
           6960065-6960163,6960282-6960467,6960611-6960613
          Length = 460

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -1

Query: 713 QRQVKQHSNQRPPQHRPHEHSRPVLTPPRDIRIAAPTTV-LRRTVDRQLDVEHLPSS 546
           +R+ +Q    R  +H  H   RP+L  PRD R  + TT  +   + +++D E+   S
Sbjct: 12  RRRREQQQQGREQRHHHHHRRRPLLLQPRDERCVSCTTFNILAPIYKRMDSENCRES 68


>12_01_0615 + 5072267-5073253
          Length = 328

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -3

Query: 588 YGRSPTRRRALAEFGSFTQSLNISTLILKISLARRFC 478
           YGR+P RRR+  E G  T   ++  L+L+    RR C
Sbjct: 72  YGRTPFRRRSRRESGKPTPLRDLIGLLLEKDPGRRLC 108


>02_01_0377 +
           2728892-2729187,2729483-2729544,2730516-2730570,
           2730784-2730858,2730980-2731054,2731155-2731202,
           2731548-2732357,2732450-2732498,2733157-2733266,
           2733381-2733488,2733920-2733980
          Length = 582

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -3

Query: 600 CTAPY-GRSPTRRRALAEFGSFTQSL 526
           C APY G+S TRR+ L  +  FTQ L
Sbjct: 126 CDAPYNGQSNTRRKGLMTYKQFTQKL 151


>10_07_0113 -
           12993300-12993413,12993493-12993775,12993856-12994026,
           12994104-12994948,12995035-12995307,12995549-12995953
          Length = 696

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = -1

Query: 707 QVKQHSNQRPPQHRPHEHSRPVLTPPRDIRIAAPTTVLRRTVDRQLDVE 561
           Q  +HS +     RP   SRP LT P    ++ P  V +R  D QL  +
Sbjct: 305 QWPKHSIEINITPRPAPSSRPPLTRPHQTVVSLPPAVEQRDEDLQLQYD 353


>04_04_1465 +
           33794225-33794389,33794471-33794597,33794669-33794799,
           33795153-33795254,33795337-33795420,33795504-33795731,
           33795934-33796038,33796376-33796731,33797146-33797303,
           33797399-33797505,33797852-33798061
          Length = 590

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 719 HEQRQVKQHSNQRPPQHRPHEHSRPVLTPPRDIRIAA 609
           H  +Q+K    ++ P+H PH  + PV    R  R A+
Sbjct: 545 HALKQIKGDKREKHPRHVPHAEAAPVDQWDRSFRAAS 581


>02_05_1312 +
           35642687-35642923,35643712-35643831,35644468-35644534,
           35644673-35644694,35645053-35645152,35645282-35645414,
           35645483-35645517,35645708-35646409,35646789-35647121,
           35647337-35647601,35647665-35647999,35648105-35648177,
           35648271-35648356,35648479-35648598,35648674-35648741,
           35648825-35648882
          Length = 917

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 18/51 (35%), Positives = 20/51 (39%)
 Frame = -1

Query: 683 RPPQHRPHEHSRPVLTPPRDIRIAAPTTVLRRTVDRQLDVEHLPSSVPLLN 531
           RPP  RP E  R V T P  +R   P        D   DVE     +  LN
Sbjct: 42  RPPAMRPEEEGRGVATRPGALRERKPPPNAFNAPDDDEDVEKTDQLLEPLN 92


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,471,221
Number of Sequences: 37544
Number of extensions: 280610
Number of successful extensions: 1021
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)