Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3p20
         (725 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68011-3|CAA92014.2|  821|Caenorhabditis elegans Hypothetical pr...    31   0.63 
U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z48638-6|CAA88567.1|  541|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z73422-5|CAE54882.1|  323|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z73422-4|CAA97770.1|  319|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z68270-9|CAE54911.1|  307|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z68270-8|CAC35869.1|  309|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z68270-7|CAA92571.2|  109|Caenorhabditis elegans Hypothetical pr...    28   7.8  
U64857-1|AAC25868.1| 2167|Caenorhabditis elegans Hypothetical pr...    28   7.8  
L37867-1|AAA63155.1|  319|Caenorhabditis elegans homeodomain pro...    28   7.8  
AL021567-3|CAA16509.2|  650|Caenorhabditis elegans Hypothetical ...    28   7.8  
AF202930-1|AAK69380.1|  109|Caenorhabditis elegans Ny protein.         28   7.8  

>Z68011-3|CAA92014.2|  821|Caenorhabditis elegans Hypothetical
           protein T21B6.3 protein.
          Length = 821

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 716 EQRQVKQHSNQRPPQHRPHEHSRPVLTPPR 627
           +Q+Q +Q   QRPPQ +P    +P   PP+
Sbjct: 249 QQQQQQQQQQQRPPQPQPQPQPQPPQRPPQ 278


>U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical
           protein C48B6.4 protein.
          Length = 623

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -1

Query: 107 MNTKKKSLL*GSVERFDYENIFNLLRKHQIMLNHV 3
           MN KK+ LL   +   +Y+N+ N+   H+I+ N V
Sbjct: 561 MNLKKQQLLIFKMGESEYQNVVNVTHFHEIVKNQV 595


>Z48638-6|CAA88567.1|  541|Caenorhabditis elegans Hypothetical
           protein ZK892.3 protein.
          Length = 541

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 56  NQIVLPILITMIFF*CSLSSKLNLSHIGPNRE 151
           N IV  I IT+++F    S  +NL H+G + E
Sbjct: 454 NLIVCSIGITVVYFYLEESRNVNLQHVGQDEE 485


>Z73422-5|CAE54882.1|  323|Caenorhabditis elegans Hypothetical
           protein B0564.10b protein.
          Length = 323

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = -1

Query: 692 SNQRPPQHRPHEHSRPVLTPPRDIRIAAP-TTVLRRTVDRQLDVEHLPSSVP 540
           S+  P  H P+  +  +  PP DI    P   +L   V ++ D  HL +S P
Sbjct: 44  SSLAPLTHNPYAFNYSIPLPPTDITTKLPKLELLSLDVKQEQDDNHLDTSSP 95


>Z73422-4|CAA97770.1|  319|Caenorhabditis elegans Hypothetical
           protein B0564.10a protein.
          Length = 319

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = -1

Query: 692 SNQRPPQHRPHEHSRPVLTPPRDIRIAAP-TTVLRRTVDRQLDVEHLPSSVP 540
           S+  P  H P+  +  +  PP DI    P   +L   V ++ D  HL +S P
Sbjct: 44  SSLAPLTHNPYAFNYSIPLPPTDITTKLPKLELLSLDVKQEQDDNHLDTSSP 95


>Z68270-9|CAE54911.1|  307|Caenorhabditis elegans Hypothetical
           protein ZC410.7c protein.
          Length = 307

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = -1

Query: 680 PPQHRPHEHSRPV 642
           PPQH P+EH++P+
Sbjct: 34  PPQHFPYEHTKPI 46


>Z68270-8|CAC35869.1|  309|Caenorhabditis elegans Hypothetical
           protein ZC410.7b protein.
          Length = 309

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = -1

Query: 680 PPQHRPHEHSRPV 642
           PPQH P+EH++P+
Sbjct: 34  PPQHFPYEHTKPI 46


>Z68270-7|CAA92571.2|  109|Caenorhabditis elegans Hypothetical
           protein ZC410.7a protein.
          Length = 109

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = -1

Query: 680 PPQHRPHEHSRPV 642
           PPQH P+EH++P+
Sbjct: 34  PPQHFPYEHTKPI 46


>U64857-1|AAC25868.1| 2167|Caenorhabditis elegans Hypothetical protein
            C37C3.6b protein.
          Length = 2167

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = -1

Query: 686  QRPPQHRPHEHSRPVLTPPRDIRIAAPTTVLRRTVDRQLDVEHLPSSVP 540
            +R P HR    SRP+LTP ++  +  P T    TV       + P S P
Sbjct: 2069 KRLPGHRTT--SRPMLTPSKNFSLGTPPTPSPSTVSTTPFRIYTPGSAP 2115


>L37867-1|AAA63155.1|  319|Caenorhabditis elegans homeodomain
           protein protein.
          Length = 319

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = -1

Query: 692 SNQRPPQHRPHEHSRPVLTPPRDIRIAAP-TTVLRRTVDRQLDVEHLPSSVP 540
           S+  P  H P+  +  +  PP DI    P   +L   V ++ D  HL +S P
Sbjct: 44  SSLAPLTHNPYAFNYSIPLPPTDITTKLPKLELLSLDVKQEQDDNHLDTSSP 95


>AL021567-3|CAA16509.2|  650|Caenorhabditis elegans Hypothetical
           protein F21A10.4 protein.
          Length = 650

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = +2

Query: 443 IYQHAIGLEIKRQKRRAKEIFNISVLIFRD*V---KEPNSA 556
           + +H I LEIK QKR+   IF   ++I  + V   K P  A
Sbjct: 250 VVKHEIVLEIKMQKRKKPVIFKYPIIICNEEVAKHKRPREA 290


>AF202930-1|AAK69380.1|  109|Caenorhabditis elegans Ny protein.
          Length = 109

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = -1

Query: 680 PPQHRPHEHSRPV 642
           PPQH P+EH++P+
Sbjct: 34  PPQHFPYEHTKPI 46


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,334,860
Number of Sequences: 27780
Number of extensions: 249439
Number of successful extensions: 809
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)