Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3p16
         (596 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0127 + 988066-988171,988259-988881,988986-989396,989463-99...    32   0.30 
02_02_0670 + 12787817-12787876,12788129-12788388,12788869-127892...    29   2.1  
12_02_0098 + 13592581-13593120,13595729-13596668,13596879-135975...    28   4.9  
11_01_0014 + 108647-108816,109704-109803,109891-110018,110232-11...    28   6.5  
02_05_1213 - 34963971-34964658,34965030-34965270,34965347-349657...    27   8.6  
01_01_0183 + 1565166-1565306,1565408-1565503,1567023-1567124,156...    27   8.6  

>03_01_0127 +
           988066-988171,988259-988881,988986-989396,989463-990037,
           990137-990194
          Length = 590

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +2

Query: 200 QTSITLDHQVGTCKMAPTGDPTGVVSPRLLVHGVKGLRIADASIMPRIPASHTHAPVVMI 379
           +T +T+ H  G C +        VV     V GV+GLR+ D+S     P ++  A V+M+
Sbjct: 517 ETVMTIWHYHGGCHVG------AVVDQDYRVLGVRGLRVVDSSTFKYSPGTNPQATVMML 570

Query: 380 AEKAADMI-KEDW 415
                  I KE W
Sbjct: 571 GRYMGLKIQKERW 583


>02_02_0670 +
           12787817-12787876,12788129-12788388,12788869-12789205,
           12789457-12789549
          Length = 249

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +2

Query: 248 PTGDPTGVVSPRLLVHGVKGLRIADASIMPRIPASHTHAPVVMIAEKAADM 400
           P  D T V++  L+  G  GL++    +   +P+S THA ++ + E    M
Sbjct: 172 PHSDGT-VITVLLVARGADGLQVLRYGVWYSVPSSSTHALLINVGESTEVM 221


>12_02_0098 +
           13592581-13593120,13595729-13596668,13596879-13597502,
           13604810-13604946,13604994-13605035
          Length = 760

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = +2

Query: 89  IGTKAFQQYNTKLHDIP-FPGC---EHLIFDSDEYWECAIMQTSITLDHQVGTCKMAPT 253
           +    F+    +L DIP  PG    EHL+ D++E ++  ++     LD Q  TC    T
Sbjct: 79  VAKNRFEDEVEELMDIPELPGRLEDEHLVSDAEERYDDGVLLLDEFLDMQYRTCDSVRT 137


>11_01_0014 +
           108647-108816,109704-109803,109891-110018,110232-110394,
           110491-110603,111080-111118,111319-111402,111486-111534,
           111624-111715,111999-112128,112225-112301,112377-113995,
           114348-114545,114635-115173
          Length = 1166

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = +2

Query: 203 TSITLDHQVGTCKMAPTGDPTGVVSPRLLVHGVKGLRIADASIMPRIPASHTH 361
           +S+TL  + G   +A    P  ++S  ++V   + L++AD++     P+S  H
Sbjct: 610 SSVTLSRKDGVQSIAENQQPDAILSTSVVVPFSQNLKLADSNDSTCQPSSDKH 662


>02_05_1213 -
           34963971-34964658,34965030-34965270,34965347-34965736,
           34966515-34966781,34966881-34967249,34967931-34968014,
           34968113-34968226,34969952-34970018
          Length = 739

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 3/24 (12%)
 Frame = -3

Query: 294 CTNNLGE---TTPVGSPVGAILQV 232
           CT+N  +   TTP+GSP G +L +
Sbjct: 90  CTDNCSDPMTTTPIGSPCGCVLPI 113


>01_01_0183 +
           1565166-1565306,1565408-1565503,1567023-1567124,
           1567478-1567570,1567648-1567715,1567806-1567879,
           1567987-1568119,1568426-1568441
          Length = 240

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 288 NNLGETTPVGSPVGAILQVPTW*SSVIEVCI 196
           + L  TTP+ S   AI +V  W +S+IE  +
Sbjct: 94  SGLSTTTPISSTAMAIQRVHVWDNSIIETAM 124


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,524,055
Number of Sequences: 37544
Number of extensions: 227441
Number of successful extensions: 512
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)