Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3p16
         (596 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC034502-1|AAH34502.1|  594|Homo sapiens choline dehydrogenase p...    73   8e-13
AJ272267-1|CAB75961.1|  482|Homo sapiens choline dehydrogenase p...    73   8e-13
X96753-1|CAA65529.1| 2322|Homo sapiens melanoma-associated chond...    31   4.1  

>BC034502-1|AAH34502.1|  594|Homo sapiens choline dehydrogenase
           protein.
          Length = 594

 Score = 72.9 bits (171), Expect = 8e-13
 Identities = 36/79 (45%), Positives = 50/79 (63%)
 Frame = +2

Query: 170 SDEYWECAIMQTSITLDHQVGTCKMAPTGDPTGVVSPRLLVHGVKGLRIADASIMPRIPA 349
           SD+  +  +   + +  H   TCKM    DPT VV P+  V GV+ LR+ DASIMP + +
Sbjct: 494 SDKEIDAFVRAKADSAYHPSCTCKMGQPSDPTAVVDPQTRVLGVENLRVVDASIMPSMVS 553

Query: 350 SHTHAPVVMIAEKAADMIK 406
            + +AP +MIAEKAAD+IK
Sbjct: 554 GNLNAPTIMIAEKAADIIK 572


>AJ272267-1|CAB75961.1|  482|Homo sapiens choline dehydrogenase
           protein.
          Length = 482

 Score = 72.9 bits (171), Expect = 8e-13
 Identities = 36/79 (45%), Positives = 50/79 (63%)
 Frame = +2

Query: 170 SDEYWECAIMQTSITLDHQVGTCKMAPTGDPTGVVSPRLLVHGVKGLRIADASIMPRIPA 349
           SD+  +  +   + +  H   TCKM    DPT VV P+  V GV+ LR+ DASIMP + +
Sbjct: 382 SDKEIDAFVRAKADSAYHPSCTCKMGQPSDPTAVVDPQTRVLGVENLRVVDASIMPSMVS 441

Query: 350 SHTHAPVVMIAEKAADMIK 406
            + +AP +MIAEKAAD+IK
Sbjct: 442 GNLNAPTIMIAEKAADIIK 460


>X96753-1|CAA65529.1| 2322|Homo sapiens melanoma-associated
           chondroitin sulfate proteoglycan (MCSP) protein.
          Length = 2322

 Score = 30.7 bits (66), Expect = 4.1
 Identities = 19/68 (27%), Positives = 26/68 (38%)
 Frame = +2

Query: 149 CEHLIFDSDEYWECAIMQTSITLDHQVGTCKMAPTGDPTGVVSPRLLVHGVKGLRIADAS 328
           C  L   S  Y  C      +T     G     P       + P + +H   GLR+A  S
Sbjct: 618 CRELEAGSLVYVHCGGPAQDLTFRVSDGLQASPPATLKVVAIRPAIQIHRSTGLRLAQGS 677

Query: 329 IMPRIPAS 352
            MP +PA+
Sbjct: 678 AMPILPAN 685


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,269,093
Number of Sequences: 237096
Number of extensions: 1386263
Number of successful extensions: 2225
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2225
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6324506272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)