Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3p16
         (596 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66494-4|CAA91263.1|  599|Caenorhabditis elegans Hypothetical pr...    71   5e-13
Z93388-11|CAB07660.2|  319|Caenorhabditis elegans Hypothetical p...    28   5.8  
U21317-5|AAA62526.2|  895|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>Z66494-4|CAA91263.1|  599|Caenorhabditis elegans Hypothetical
           protein C34C6.4 protein.
          Length = 599

 Score = 71.3 bits (167), Expect = 5e-13
 Identities = 42/120 (35%), Positives = 68/120 (56%), Gaps = 1/120 (0%)
 Frame = +2

Query: 50  FRHIIMISQIENIIGTKAFQQYNTKLHDIPFPGCEHLIFDSDEYWECAIMQTSITLDHQV 229
           FR  I +S+   +  +KAF ++  K    P P C+     SD   +  + + + +  H  
Sbjct: 471 FRKCIRVSR--ELFASKAFDEFRGK-ELAPGPDCQ-----SDADIDRFVKEKAASAYHPS 522

Query: 230 GTCKMAPTGDPTGVVSPRLL-VHGVKGLRIADASIMPRIPASHTHAPVVMIAEKAADMIK 406
            TCKM    D   VV+P  + V+G + L++ DAS+MP I + + +APV+M+AE+AAD+IK
Sbjct: 523 CTCKMGSENDKMAVVNPETMGVYGTENLKVVDASVMPSIVSGNLNAPVIMMAERAADLIK 582


>Z93388-11|CAB07660.2|  319|Caenorhabditis elegans Hypothetical
           protein T10C6.3 protein.
          Length = 319

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 4/21 (19%)
 Frame = -2

Query: 394 CSFLCYHYDW----SVSVRCG 344
           C+F+ YH+ W    SVSV+CG
Sbjct: 162 CNFVFYHFGWLFAGSVSVKCG 182


>U21317-5|AAA62526.2|  895|Caenorhabditis elegans Hypothetical
           protein B0495.7 protein.
          Length = 895

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -1

Query: 188 IPSTHLSQRLDVRNQEMVYHVVLYCTVEMLLFLLYFQSAKS*LYV 54
           I  +H +    +RN EMV +  +  +   +LFL+ F +  S  YV
Sbjct: 471 IVHSHYADNNRIRNVEMVQYDTILLSFASILFLMTFYNLSSAFYV 515


>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical protein
            W01F3.3 protein.
          Length = 2175

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
 Frame = -3

Query: 327  EASAILNPLTPCTNNLGETTPVGSPVGAILQVPTW*SSVIEV--CIMAHSQYSSESKIRC 154
            E + I   +     +L E+ P G PV  +   PT  +SV+ +      H +   + ++ C
Sbjct: 1164 EPNGISRTMENVNLDLTESAPTGLPVSIVTAAPTVQASVVPLGTTPQPHFEPKFDGRVVC 1223

Query: 153  SQPGNGISCS 124
            + P +   C+
Sbjct: 1224 AMPPDAGVCT 1233


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,552,933
Number of Sequences: 27780
Number of extensions: 220395
Number of successful extensions: 562
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)