Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3p16
         (596 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.   119   2e-29
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    25   0.43 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.2  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score =  119 bits (287), Expect = 2e-29
 Identities = 51/119 (42%), Positives = 73/119 (61%)
 Frame = +2

Query: 68  ISQIENIIGTKAFQQYNTKLHDIPFPGCEHLIFDSDEYWECAIMQTSITLDHQVGTCKMA 247
           I  ++ ++ T   +    +   I    C+  + DSD+YW C I   +   +HQ GT KM 
Sbjct: 493 IRVVQKLVNTTVMRDLGVEFQKIELKQCDEFVEDSDDYWNCVIQYNTRAENHQTGTAKMG 552

Query: 248 PTGDPTGVVSPRLLVHGVKGLRIADASIMPRIPASHTHAPVVMIAEKAADMIKEDWGYL 424
           P+ DP  VVSPRL VHG++GLR+ADAS+ P++ + +  A V M+ E+AAD IKEDWG L
Sbjct: 553 PSYDPMAVVSPRLKVHGIRGLRVADASVQPQVISGNPVASVNMVGERAADFIKEDWGEL 611


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 25.4 bits (53), Expect = 0.43
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 113 YNTKLHDIPFPGCEHLIFDSDEY 181
           YN  +HD+ FPG   ++  S  Y
Sbjct: 366 YNGTVHDVEFPGXYTMVIGSGVY 388


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 284 LLVHGVKGLRIADASIMP 337
           L VHG K LRI + +  P
Sbjct: 97  LHVHGCKVLRIPEGAFQP 114


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,786
Number of Sequences: 438
Number of extensions: 2953
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)