Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3p12
(725 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 32 0.073
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ... 28 1.2
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa... 28 1.2
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc... 27 2.7
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 3.6
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 27 3.6
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 26 4.8
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom... 26 4.8
SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4... 26 4.8
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 26 6.3
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 26 6.3
SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic enzyme|Schizosaccha... 25 8.3
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 25 8.3
SPBC337.10c |||anamorsin family protein|Schizosaccharomyces pomb... 25 8.3
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 25 8.3
>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1379
Score = 32.3 bits (70), Expect = 0.073
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Frame = +2
Query: 302 TYKNLQDAIIAYLDDPDTKLPE-SEKAIAIQKLFKNPNYYPRQQIQRHYPKTVEEYTGYN 478
T NL D+ ++ D+ L + + KA + + + R+ ++H T+E Y G+N
Sbjct: 732 TKSNLSDSALSTPQHSDSVLFDITSKAARLASTCAKTDLH-RKPRRKHKSFTLENYFGHN 790
Query: 479 AETERPVYKYTIPEKKPTYYGEEE 550
AE E P + P+ Y E +
Sbjct: 791 AEDESPQSDEVESQTPPSGYSEND 814
>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 275 AKRPEYAYSTYKNLQDAIIAYLDDPDTKLPESEK 376
AKR Y YKNL + +Y D+ DT P K
Sbjct: 472 AKRFRETYPRYKNLYLKVSSYYDNNDTNNPNLNK 505
>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 639
Score = 28.3 bits (60), Expect = 1.2
Identities = 18/77 (23%), Positives = 35/77 (45%)
Frame = +2
Query: 305 YKNLQDAIIAYLDDPDTKLPESEKAIAIQKLFKNPNYYPRQQIQRHYPKTVEEYTGYNAE 484
YK + D + ++ L + + +L K+PNY + ++R Y K +++
Sbjct: 258 YKVIPDPSVNKDTPTESDLNRLKADLLRAQLKKDPNY---ESLEREYQKACDDFENSLHP 314
Query: 485 TERPVYKYTIPEKKPTY 535
+E + TIP KK +
Sbjct: 315 SENSNSQATIPSKKRNF 331
>SPBC685.09 |orc2|orp2|origin recognition complex subunit
Orc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 27.1 bits (57), Expect = 2.7
Identities = 16/62 (25%), Positives = 29/62 (46%)
Frame = +2
Query: 422 RQQIQRHYPKTVEEYTGYNAETERPVYKYTIPEKKPTYYGEEENINLGNFEGNGLSLFKT 601
R +I+RH ++ G N+ + P+Y P+ E+E++ N G+S+ K
Sbjct: 89 RIEIERHLLGEFDDNVGSNSLLDVPLYSLEAEPLSPSVMLEDESMEGINQSPQGISVEKL 148
Query: 602 EK 607
K
Sbjct: 149 GK 150
>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1877
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = +2
Query: 311 NLQDAIIAYLDDP---DTKLPESEKAIAIQKL 397
N A++ YL DP D++LP+S +AIA+ L
Sbjct: 736 NKLSALVEYLLDPSLRDSQLPQSIRAIALYNL 767
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 26.6 bits (56), Expect = 3.6
Identities = 15/53 (28%), Positives = 20/53 (37%)
Frame = +2
Query: 374 KAIAIQKLFKNPNYYPRQQIQRHYPKTVEEYTGYNAETERPVYKYTIPEKKPT 532
KA F+ P + P I YP G N+ + P Y +KPT
Sbjct: 34 KAAPFIPSFQRPGFVPVNNIAGGYPYAQYTGQGQNSNSPHPTKSYQQYYQKPT 86
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 26.2 bits (55), Expect = 4.8
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Frame = +1
Query: 307 QEFTRCHHSLFGR--PRHQAAGERKSYSHPETIQEPKLLSETANPKTLSENR*RIHRL*C 480
+E CHH F R P + + K + H E K L + T +++ H C
Sbjct: 338 EEHCSCHHDKFSRPVPHNGTKPDHKPWKHEEHCHHGKFLRPVPHNVTKPDHKPWKHEEHC 397
Query: 481 RN*K 492
+ K
Sbjct: 398 HHGK 401
>SPAC6G10.08 |idp1||isocitrate dehydrogenase
Idp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 418
Score = 26.2 bits (55), Expect = 4.8
Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 8/111 (7%)
Frame = +3
Query: 279 NDRNTLTAPTRIYKMPS*LIWTTQTPSCRRAKKL*PSRNYSRTQITIRDSKSKDTIRKP- 455
ND+ T+ A I K + T TP R K+ + + TIR+ + R+P
Sbjct: 63 NDQITVDAAKAILKNDVGIKCATITPDEARVKEYNLKKMWKSPNGTIRNILNGTVFREPI 122
Query: 456 -LKNTPAIMQKLKDPFT------NTRYPKRSLLITGKKRISI*ETLKGTAS 587
+KN P + +P +Y L+ +G ++ + T KG S
Sbjct: 123 LIKNIPKYIPGWTNPICIGRHAFGDQYKSTDLVASGPGKLELSFTPKGNPS 173
>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 26.2 bits (55), Expect = 4.8
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Frame = +2
Query: 455 VEEYTGYNAETERPVYKYTIPEKKPTYYGEEENINLGNFEGNGLSLFKT----EKRPEPL 622
+ Y +NA+ +Y+ IP + +ENIN+GN E +++T +
Sbjct: 334 IHAYLNFNAK----LYEECIPPSILYFNKNDENINVGNIEDITNYMYETFINEASLCDKF 389
Query: 623 NLRKHQAIKGAPLS 664
RKH+ I+ PLS
Sbjct: 390 MKRKHERIE-TPLS 402
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 25.8 bits (54), Expect = 6.3
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +1
Query: 100 ASDIVRKDVS-LFDTLNSEHSSSELDSRKSVAVQTQIRRGVGVPTQIRP 243
A D + ++ LF+T+N E +RKSVA+Q G ++P
Sbjct: 182 AGDFLNANIEQLFNTMNIEFPPHYRIARKSVAIQQSGNMANGSADAVKP 230
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 177 KKERRRTDSNTPWRRSPNSNSP*KTNTMTPARGRNDR 287
KK+ R DS W +PN++S +NTM ++ +N +
Sbjct: 690 KKQARPVDS---WGSTPNTSSNRNSNTMGVSKKKNGK 723
>SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic
enzyme|Schizosaccharomyces pombe|chr 2|||Manual
Length = 328
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = -3
Query: 699 SSYSCSLV*CATLNGAPLIAWCLRKFSGSGLFSVLNKLRP 580
++ + LV AT + P A+C+++ + + L S L+ +RP
Sbjct: 219 NTINAHLVVSATGHDGPFGAFCVKRLASAQLVSNLHDMRP 258
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 25.4 bits (53), Expect = 8.3
Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Frame = +2
Query: 443 YPKTVEEYT---GYNAETERPVYKYTIPEKKPTYYGEEENINLGNFEGN 580
YP V T YN + E+P Y + Y E N N+ N N
Sbjct: 12 YPTAVSYPTQGQSYNTQEEQPAYPQRFSTSQGMYAAEYGNANMMNTSEN 60
>SPBC337.10c |||anamorsin family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 288
Score = 25.4 bits (53), Expect = 8.3
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -1
Query: 398 IVSGWL*LFRSPAAWCLGRPNKL 330
++SGWL +SP W L RPN++
Sbjct: 104 LLSGWLIESKSP--WILSRPNQV 124
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 25.4 bits (53), Expect = 8.3
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +2
Query: 290 YAYSTYKNLQDAIIAYLDDPDTKLPESEKAIAIQKLFKN-PNYYPRQQIQRHYPKTVEE 463
Y Y N ++A A+L + ++P+S + A N P+ +P + P + E
Sbjct: 43 YDYFVKHNFEEAAQAFLRESKIQIPKSSSSTAFSPSNNNAPSPFPPKNSSLASPSKISE 101
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,062,628
Number of Sequences: 5004
Number of extensions: 68691
Number of successful extensions: 247
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -