Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3p12
(725 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK129876-1|BAC85246.1| 480|Homo sapiens protein ( Homo sapiens ... 40 0.012
BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein. 32 2.4
AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator su... 32 2.4
AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein pro... 32 2.4
AB016088-1|BAA83714.1| 956|Homo sapiens RNA binding protein pro... 32 2.4
AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein pro... 32 2.4
AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein. 32 2.4
AC006539-3|AAD14472.1| 498|Homo sapiens BC39498_1 protein. 31 3.2
L14837-1|AAA02891.1| 1736|Homo sapiens tight junction (zonula oc... 30 9.7
DQ015919-1|AAY22179.1| 1748|Homo sapiens tight junction protein ... 30 9.7
BC111712-1|AAI11713.1| 1748|Homo sapiens tight junction protein ... 30 9.7
>AK129876-1|BAC85246.1| 480|Homo sapiens protein ( Homo sapiens
cDNA FLJ26366 fis, clone HRT05814. ).
Length = 480
Score = 39.5 bits (88), Expect = 0.012
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Frame = +2
Query: 521 KKPTYYGE-EENINLGNFEGNGLSLFKTEKRPEPLNLRKHQAIKGAPLSVAHYTREQEYE 697
+K T++G ++ EG+GLSL + E+ E R+ +A GAPLS H E+E E
Sbjct: 296 EKGTHHGSRDQEDEEDEEEGHGLSLNQEEEEEEDEERREERAEVGAPLSPDHSEEEEEEE 355
Query: 698 EPHDQFNP 721
E ++ P
Sbjct: 356 EGLEEDEP 363
>BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein.
Length = 1022
Score = 31.9 bits (69), Expect = 2.4
Identities = 24/101 (23%), Positives = 42/101 (41%)
Frame = +3
Query: 159 QQRTRFKKERRRTDSNTPWRRSPNSNSP*KTNTMTPARGRNDRNTLTAPTRIYKMPS*LI 338
+ R+R R R+ S TP RR S +P + + + R R+ P R
Sbjct: 572 RSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRS------ 625
Query: 339 WTTQTPSCRRAKKL*PSRNYSRTQITIRDSKSKDTIRKPLK 461
T++P RR++ P+R R++ + + R P +
Sbjct: 626 -RTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPAR 665
>AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator
subunit SRm300 protein.
Length = 2296
Score = 31.9 bits (69), Expect = 2.4
Identities = 24/101 (23%), Positives = 42/101 (41%)
Frame = +3
Query: 159 QQRTRFKKERRRTDSNTPWRRSPNSNSP*KTNTMTPARGRNDRNTLTAPTRIYKMPS*LI 338
+ R+R R R+ S TP RR S +P + + + R R+ P R
Sbjct: 572 RSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRS------ 625
Query: 339 WTTQTPSCRRAKKL*PSRNYSRTQITIRDSKSKDTIRKPLK 461
T++P RR++ P+R R++ + + R P +
Sbjct: 626 -RTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPAR 665
>AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein
protein.
Length = 2752
Score = 31.9 bits (69), Expect = 2.4
Identities = 24/101 (23%), Positives = 42/101 (41%)
Frame = +3
Query: 159 QQRTRFKKERRRTDSNTPWRRSPNSNSP*KTNTMTPARGRNDRNTLTAPTRIYKMPS*LI 338
+ R+R R R+ S TP RR S +P + + + R R+ P R
Sbjct: 572 RSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRS------ 625
Query: 339 WTTQTPSCRRAKKL*PSRNYSRTQITIRDSKSKDTIRKPLK 461
T++P RR++ P+R R++ + + R P +
Sbjct: 626 -RTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPAR 665
>AB016088-1|BAA83714.1| 956|Homo sapiens RNA binding protein
protein.
Length = 956
Score = 31.9 bits (69), Expect = 2.4
Identities = 24/101 (23%), Positives = 42/101 (41%)
Frame = +3
Query: 159 QQRTRFKKERRRTDSNTPWRRSPNSNSP*KTNTMTPARGRNDRNTLTAPTRIYKMPS*LI 338
+ R+R R R+ S TP RR S +P + + + R R+ P R
Sbjct: 537 RSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRS------ 590
Query: 339 WTTQTPSCRRAKKL*PSRNYSRTQITIRDSKSKDTIRKPLK 461
T++P RR++ P+R R++ + + R P +
Sbjct: 591 -RTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPAR 630
>AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein
protein.
Length = 1262
Score = 31.9 bits (69), Expect = 2.4
Identities = 24/101 (23%), Positives = 42/101 (41%)
Frame = +3
Query: 159 QQRTRFKKERRRTDSNTPWRRSPNSNSP*KTNTMTPARGRNDRNTLTAPTRIYKMPS*LI 338
+ R+R R R+ S TP RR S +P + + + R R+ P R
Sbjct: 362 RSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRS------ 415
Query: 339 WTTQTPSCRRAKKL*PSRNYSRTQITIRDSKSKDTIRKPLK 461
T++P RR++ P+R R++ + + R P +
Sbjct: 416 -RTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPAR 455
>AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.
Length = 2800
Score = 31.9 bits (69), Expect = 2.4
Identities = 24/101 (23%), Positives = 42/101 (41%)
Frame = +3
Query: 159 QQRTRFKKERRRTDSNTPWRRSPNSNSP*KTNTMTPARGRNDRNTLTAPTRIYKMPS*LI 338
+ R+R R R+ S TP RR S +P + + + R R+ P R
Sbjct: 620 RSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRS------ 673
Query: 339 WTTQTPSCRRAKKL*PSRNYSRTQITIRDSKSKDTIRKPLK 461
T++P RR++ P+R R++ + + R P +
Sbjct: 674 -RTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPAR 713
>AC006539-3|AAD14472.1| 498|Homo sapiens BC39498_1 protein.
Length = 498
Score = 31.5 bits (68), Expect = 3.2
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 596 KTEKRPEPLNLRKHQAIKGAPLSVAHYTRE 685
+ E+R EP N+++H+ I P +HYT +
Sbjct: 55 RLEQRQEPWNVKRHETIAKPPAMSSHYTED 84
>L14837-1|AAA02891.1| 1736|Homo sapiens tight junction (zonula
occludens) protein ZO-1 protein.
Length = 1736
Score = 29.9 bits (64), Expect = 9.7
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +2
Query: 419 PRQQIQRHYPKTVEEYTGYNAETERPVYKYTIPEKKPTY 535
P + H PKTVEE T E + P ++PE KP Y
Sbjct: 343 PVKHADDHTPKTVEEVTVERNEKQTP----SLPEPKPVY 377
>DQ015919-1|AAY22179.1| 1748|Homo sapiens tight junction protein 1
(zona occludens 1) protein.
Length = 1748
Score = 29.9 bits (64), Expect = 9.7
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +2
Query: 419 PRQQIQRHYPKTVEEYTGYNAETERPVYKYTIPEKKPTY 535
P + H PKTVEE T E + P ++PE KP Y
Sbjct: 355 PVKHADDHTPKTVEEVTVERNEKQTP----SLPEPKPVY 389
>BC111712-1|AAI11713.1| 1748|Homo sapiens tight junction protein 1
(zona occludens 1) protein.
Length = 1748
Score = 29.9 bits (64), Expect = 9.7
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +2
Query: 419 PRQQIQRHYPKTVEEYTGYNAETERPVYKYTIPEKKPTY 535
P + H PKTVEE T E + P ++PE KP Y
Sbjct: 355 PVKHADDHTPKTVEEVTVERNEKQTP----SLPEPKPVY 389
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,308,239
Number of Sequences: 237096
Number of extensions: 2220186
Number of successful extensions: 5449
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5403
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8567175942
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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