Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3p12
         (725 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81133-4|CAI70414.2|  184|Caenorhabditis elegans Hypothetical pr...    32   0.36 
U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical pr...    31   0.84 
AC024826-8|AAF60795.2|  580|Caenorhabditis elegans Hypothetical ...    30   1.9  
Z79695-2|CAB01971.2| 1008|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z29560-2|CAA82662.1| 1131|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AF120269-1|AAD13795.1| 1131|Caenorhabditis elegans sex determina...    29   4.5  
U41031-2|AAA82619.2|  615|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>Z81133-4|CAI70414.2|  184|Caenorhabditis elegans Hypothetical
           protein T28B8.6 protein.
          Length = 184

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 434 QRHYPKTVEEYTGYNAETERPVYKYTIPEKKPT 532
           QR YP ++  Y G  AE + P+ K   P  KPT
Sbjct: 145 QREYPVSLTLYLGQKAEEKTPIIKKAPPAAKPT 177


>U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical protein
            F21C10.7 protein.
          Length = 2541

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 31/115 (26%), Positives = 41/115 (35%), Gaps = 10/115 (8%)
 Frame = +2

Query: 410  NYYPRQQIQRHYPKTVEEYTGYNAETERPVYKYTIPEK-----KPTYYGEEENINLGNFE 574
            NY  +QQ Q+    TV E T      +     +  P K     K     E++NIN   F 
Sbjct: 1762 NYQEQQQKQQQVTSTVTETTSGEGWVQHQHQDFVEPHKSTITVKKLDIEEQQNINQQRFA 1821

Query: 575  GNGLSLFKTEKRPEPLNLRKHQAIKGAPLSVAHYTR----EQEYEEPHDQF-NPH 724
                    TEK  E L+      +K  P +    T     E   +  H  F NPH
Sbjct: 1822 QPEQKHITTEKIEEDLHRESRIPVKREPQTTTTVTEITSGEGWVQNSHQDFQNPH 1876


>AC024826-8|AAF60795.2|  580|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.3a protein.
          Length = 580

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +3

Query: 159 QQRTRFKKERRRTDSNTPWRRSPNSNSP*KTNTMTPAR 272
           + R R +   RR D  TP RRSP   SP ++    P R
Sbjct: 105 RSRDRRRSPPRRRDRRTPPRRSPGRRSPPRSRLPGPER 142


>Z79695-2|CAB01971.2| 1008|Caenorhabditis elegans Hypothetical
           protein F27D4.6 protein.
          Length = 1008

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/58 (25%), Positives = 28/58 (48%)
 Frame = +3

Query: 432 SKDTIRKPLKNTPAIMQKLKDPFTNTRYPKRSLLITGKKRISI*ETLKGTASVCSRLR 605
           SK+ +  P K++         P+ N R+P   +  +   R+S  E +K   S+C +L+
Sbjct: 806 SKEKVATPKKDSTHQKSATPTPYNNPRFPLLDVPRSLNNRLSKEEYMKQYNSICEKLK 863


>Z29560-2|CAA82662.1| 1131|Caenorhabditis elegans Hypothetical
           protein K03H1.2 protein.
          Length = 1131

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 5/118 (4%)
 Frame = +3

Query: 159 QQRTRFKKERRRTDSNTPWRRSPNSNSP*KTNTMTPARGRNDRNTLTAPTRIYKMPS*LI 338
           ++R R + ERR   S   W+      +P      TP+R   D++     +R  K  S   
Sbjct: 99  RRRDRDRSERREPSSRRGWKDRSGDQTPRFKVPDTPSRMSWDQDDREGSSR--KRNS--- 153

Query: 339 WTTQTPSCRRAKK--L*PSRNYS---RTQITIRDSKSKDTIRKPLKNTPAIMQKLKDP 497
           W   TP   R +K  +   R+ S   R++   RD + +   RKP  +  ++ ++  +P
Sbjct: 154 WDMPTPRGERDRKRYMDSERSISSAWRSERRNRDDEKRRRHRKPEDSVRSVKEEKAEP 211


>AF120269-1|AAD13795.1| 1131|Caenorhabditis elegans sex
           determination protein MOG-1 protein.
          Length = 1131

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 5/118 (4%)
 Frame = +3

Query: 159 QQRTRFKKERRRTDSNTPWRRSPNSNSP*KTNTMTPARGRNDRNTLTAPTRIYKMPS*LI 338
           ++R R + ERR   S   W+      +P      TP+R   D++     +R  K  S   
Sbjct: 99  RRRDRDRSERREPSSRRGWKDRSGDQTPRFKVPDTPSRMSWDQDDREGSSR--KRNS--- 153

Query: 339 WTTQTPSCRRAKK--L*PSRNYS---RTQITIRDSKSKDTIRKPLKNTPAIMQKLKDP 497
           W   TP   R +K  +   R+ S   R++   RD + +   RKP  +  ++ ++  +P
Sbjct: 154 WDMPTPRGERDRKRYMDSERSISSAWRSERRNRDDEKRRRHRKPEDSVRSVKEEKAEP 211


>U41031-2|AAA82619.2|  615|Caenorhabditis elegans Hypothetical
           protein C16B8.2 protein.
          Length = 615

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = +2

Query: 467 TGYNAETERPVYKYTIPEKKP--TYYGEEENIN-LGNFEGNGLSLFKTEKRPEPLNLRKH 637
           T ++   E P+    + E+KP   + G+  NI  L N  G+  S    E  PEP   ++H
Sbjct: 493 TKFSPVPELPIEDKILTERKPWMIHQGKLSNIAPLSNISGDMASDDPPEVTPEPAPFQQH 552

Query: 638 Q 640
           Q
Sbjct: 553 Q 553


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,736,970
Number of Sequences: 27780
Number of extensions: 380612
Number of successful extensions: 1245
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1242
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)