Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3p10
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc...    30   0.41 
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    29   0.54 
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    29   0.54 
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|...    29   0.71 
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    27   2.2  
SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c...    27   2.9  
SPBC713.05 |||WD repeat protein, human MAPK organizer 1 |Schizos...    27   3.8  
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|...    26   6.6  
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    26   6.6  
SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc...    25   8.8  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    25   8.8  
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    25   8.8  

>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 29.9 bits (64), Expect = 0.41
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
 Frame = +1

Query: 478 ALESFNMQFYGSPGISSYSTP-----FITQRSPALSLGLTADQTKMAVGYGDSSIKVYDM 642
           ALE F+ +FY      +  +      ++   +   S+  + D + +A   GD + KV+D+
Sbjct: 150 ALELFDSRFYDRQNEENQPSARRIHGWLAHNNAIFSVNFSKDDSLLATSSGDQTSKVFDL 209

Query: 643 ETQE 654
            TQ+
Sbjct: 210 STQQ 213


>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +1

Query: 511 SPGISSYSTPFITQRSPALSLGLTADQTKMAVGYGDSSIKVYDMET 648
           SP  ++     +T R P   L +  D   M     DS +KV+D+ T
Sbjct: 251 SPSSTTPLVKMLTHRGPVRDLAVNRDGRYMVTAGADSLLKVWDLRT 296


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +1

Query: 502 FYGSPGISSYSTPFITQRSPALSLGLTADQTKMAVGYGDSSIKVYDMETQEIWDI 666
           ++ +P    Y   F    +  LS  L+ D+     G  D S+KV+D+E+ ++ +I
Sbjct: 73  WHKTPNGVEYIKEFHAHNAMLLSAELSQDERLFITGADDKSLKVFDVESIDLVNI 127


>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 612

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 8/27 (29%), Positives = 19/27 (70%)
 Frame = +1

Query: 571 LGLTADQTKMAVGYGDSSIKVYDMETQ 651
           L ++   +++A+ Y D +++ YD++TQ
Sbjct: 439 LSMSVTDSRIAIAYNDGNVRFYDLDTQ 465


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = -2

Query: 457 IVEVPVGYFDPVNCTVHTSSVANSFFDHAVFNGV 356
           ++   VG + P    + T ++ + FF HA++ G+
Sbjct: 456 VISDRVGIYGPPTKAMVTGNILHDFFQHALYRGI 489


>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 438

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 8/36 (22%), Positives = 19/36 (52%)
 Frame = +2

Query: 278 LIQMRHGSTGTVLCTLRNVQFPPKPVYAIEYSMVEE 385
           ++ M H     ++ T+R+   P +P Y ++Y  + +
Sbjct: 146 VLAMEHRDNSAIISTVRDPLHPEEPPYVVQYREISD 181


>SPBC713.05 |||WD repeat protein, human MAPK organizer 1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 565 LSLGLTADQTKMAVGYGDSSIKVYDMETQEI 657
           L L L  D TK A   GD  I+V+D+ T ++
Sbjct: 60  LDLDLVYDSTKFASCGGDKFIQVWDVNTGKV 90


>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 712

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 21/93 (22%), Positives = 35/93 (37%)
 Frame = +1

Query: 433 NTQQEPPLFCIRADPALESFNMQFYGSPGISSYSTPFITQRSPALSLGLTADQTKMAVGY 612
           N      LFC+R +P L+ ++       G+S    P    +        T ++T      
Sbjct: 454 NAHNHQHLFCLRLNPMLDGYSNSVAVVDGVSGPGEP--GSKENYYGNAFTTERTVPKT-- 509

Query: 613 GDSSIKVYDMETQEIWDIRCQVGCVMTFEGVDV 711
              +I  Y+ +T   WDI C    +  + G  V
Sbjct: 510 VKEAICDYNSDTSRTWDI-CNPNKLHPYSGKPV 541


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1201

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +2

Query: 20   LSEYIKNIKYHYKNEENPVIWYPLFHKTRLKEKKVYAWIQDNFAKFLKGTANNIT 184
            LS  ++ ++  YK  + P+I     +     E+ V    +DNF  FL G  N +T
Sbjct: 906  LSSILEMLRSRYKKFKKPIIDLNDIYIDESNERVVKGKSKDNFEYFLSG--NTVT 958


>SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 615

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 421 NCTVHTSSVANSFFDHAVFNGVHWLGRKL 335
           NC   T   AN + +  + NG+  LGR +
Sbjct: 559 NCGAFTLEEANEYINLGILNGMFVLGRSI 587


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 20/75 (26%), Positives = 32/75 (42%)
 Frame = +1

Query: 514 PGISSYSTPFITQRSPALSLGLTADQTKMAVGYGDSSIKVYDMETQEIWDIRCQVGCVMT 693
           P   SYS    T RSP+L    +           D+S+K       EI D+  +   V  
Sbjct: 430 PATKSYSATIQTPRSPSLRRADSTSHIIKVPHLPDTSVKTAKTGASEI-DVLSRYPSV-- 486

Query: 694 FEGVDVCSDSIDLNR 738
            E +D  +D I++++
Sbjct: 487 -EEIDKITDKIEVSK 500


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
           complex subunit Tpr1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1039

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 397 VANSFFDHAVFNGVHWLGRKLH 332
           + NSF    + +G +W+GR  H
Sbjct: 316 IQNSFSSSLIADGYYWMGRAYH 337


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,104,686
Number of Sequences: 5004
Number of extensions: 65201
Number of successful extensions: 195
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)