Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte3p10
         (752 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0589 + 19773904-19774032,19774224-19774298,19774947-197754...    30   2.3  
03_06_0288 + 32865414-32867249                                         29   3.0  
07_03_0590 + 19786960-19787136,19787198-19787272,19787676-197881...    29   4.0  
10_01_0026 - 351737-353443                                             28   6.9  
04_04_1073 - 30606472-30606515,30606897-30606988,30607152-306072...    28   6.9  
07_03_0674 + 20598668-20598774,20599456-20600467                       28   9.2  

>07_03_0589 +
           19773904-19774032,19774224-19774298,19774947-19775444,
           19775898-19776263,19776636-19776727,19776826-19776872,
           19776953-19777014,19778461-19778498,19779354-19779366
          Length = 439

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +2

Query: 83  YPLFHKTRLKEKKVYAWIQDNFAKFLKGTANNITYNRWYFTENG 214
           Y LFH   L E K++     +  + L G  NN+    W + ENG
Sbjct: 223 YKLFHLLCLPEMKIFL----DTTRLLAGKTNNLLEELWNYIENG 262


>03_06_0288 + 32865414-32867249
          Length = 611

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -1

Query: 431 RSCKLHRPYKQRSKLFLRPCCIQWRTLAWAETAH 330
           RS +L R YK   +L ++P  I WRTL  A   H
Sbjct: 387 RSGQLERAYKFIDELPIKPTAILWRTLLSACAGH 420


>07_03_0590 +
           19786960-19787136,19787198-19787272,19787676-19788173,
           19788605-19788970,19788995-19789009
          Length = 376

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 18/69 (26%), Positives = 33/69 (47%)
 Frame = +2

Query: 8   KNEVLSEYIKNIKYHYKNEENPVIWYPLFHKTRLKEKKVYAWIQDNFAKFLKGTANNITY 187
           +N  L +Y+++     +N  + +  Y L H   L E K++     +  + L G  NN+  
Sbjct: 216 ENTCLHKYLEDNLSPSQNHLDYI--YKLIHLLCLPEMKIFL----DTIRLLAGKTNNLLE 269

Query: 188 NRWYFTENG 214
             WY+ E+G
Sbjct: 270 ELWYYIEDG 278


>10_01_0026 - 351737-353443
          Length = 568

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 307 YSAMYIEKCAVSAQASVRH*I-QHGRRKSLLRCLYGRCNL 423
           YSA+ +E+ A  A AS+RH   Q  +   ++R L G  +L
Sbjct: 480 YSAVEVERMAACAAASIRHSARQRPKMSQIVRALEGDASL 519


>04_04_1073 - 30606472-30606515,30606897-30606988,30607152-30607243,
            30607362-30607469,30607614-30607748,30607826-30607871,
            30608320-30608420,30608512-30608649,30608721-30608819,
            30608920-30609036,30609941-30610102,30610271-30610330,
            30611120-30611216,30611238-30611296,30611364-30611480,
            30611922-30612020,30612115-30612180,30612405-30612542,
            30612659-30612742,30612820-30612892,30612937-30612992,
            30613074-30613182,30613253-30613335,30613406-30613489,
            30613679-30613750,30613827-30613904,30613984-30614067,
            30614142-30614212,30614497-30614566,30614866-30614955,
            30615046-30615177,30615250-30615350,30615634-30615691,
            30615762-30615878,30617981-30618133
          Length = 1094

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = -1

Query: 368  IQWRTLAWAETAHFSMYIALYLYYRGASELSLMNVLQ*HEIRLENT 231
            + WR L     A F + + L L +RG S L L N  Q H  +++NT
Sbjct: 930  VMWRNLIIM--ALFQVIVLLTLNFRGTSLLQLKNDNQAHADKVKNT 973


>07_03_0674 + 20598668-20598774,20599456-20600467
          Length = 372

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +2

Query: 299 STGTVLCTLRNVQFPPKPVYAIEYSMVEERVCYAACMDGAIYRIE--IPNRNLHYSVLEP 472
           ++G V    +N    P+ V  +++   E R C AAC+   +Y IE     R +H + L P
Sbjct: 15  NSGPVHMMAKNGAGSPRTV--LDWGKEEHRRCVAACLVKGVYIIENDSTRRRVHTNALAP 72


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,518,134
Number of Sequences: 37544
Number of extensions: 402889
Number of successful extensions: 928
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)