Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte3p10
(752 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC128456-1|AAI28457.1| 1004|Homo sapiens BCL6 co-repressor protein. 33 1.5
BC128387-1|AAI28388.1| 411|Homo sapiens BCOR protein protein. 33 1.5
BC114220-1|AAI14221.1| 1703|Homo sapiens BCOR protein protein. 33 1.5
AY316592-1|AAR08265.1| 1755|Homo sapiens BCL-6 corepressor long ... 33 1.5
AK074286-1|BAB85037.1| 1139|Homo sapiens protein ( Homo sapiens ... 33 1.5
AF317392-1|AAG41430.1| 1004|Homo sapiens BCL-6 corepressor short... 33 1.5
AF317391-1|AAG41429.1| 1721|Homo sapiens BCL-6 corepressor protein. 33 1.5
AB046795-1|BAB13401.2| 1010|Homo sapiens KIAA1575 protein protein. 33 1.5
U86136-1|AAC51107.1| 2627|Homo sapiens telomerase-associated pro... 31 3.4
BC126107-1|AAI26108.1| 2627|Homo sapiens telomerase-associated p... 31 3.4
AB209669-1|BAD92906.1| 1903|Homo sapiens Telomerase protein comp... 31 3.4
>BC128456-1|AAI28457.1| 1004|Homo sapiens BCL6 co-repressor protein.
Length = 1004
Score = 32.7 bits (71), Expect = 1.5
Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 1/117 (0%)
Frame = +1
Query: 307 YSAMYIEKCAVSAQASVRH*IQHGRRKSLLRCLYGRCNLQDRNTQQEPPLFCIRADPALE 486
++A + + A + SV +Q R LR GR + + P+F + D L
Sbjct: 826 FAAESVGQSAEPPKPSVEPALQQHRDFIALREELGRISDFHETYTFKQPVFTVSKDSVLA 885
Query: 487 SFNMQFYGSPGISSYSTPFITQRSPALSLGLTADQTK-MAVGYGDSSIKVYDMETQE 654
N + G P + + P + PA++ G T + K VG S+ V T++
Sbjct: 886 GTNKENLGLPVSTPFLEPPLGSDGPAVTFGKTQEDPKPFCVGSAPPSVDVTPTYTKD 942
>BC128387-1|AAI28388.1| 411|Homo sapiens BCOR protein protein.
Length = 411
Score = 32.7 bits (71), Expect = 1.5
Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 1/117 (0%)
Frame = +1
Query: 307 YSAMYIEKCAVSAQASVRH*IQHGRRKSLLRCLYGRCNLQDRNTQQEPPLFCIRADPALE 486
++A + + A + SV +Q R LR GR + + P+F + D L
Sbjct: 233 FAAESVGQSAEPPKPSVEPALQQHRDFIALREELGRISDFHETYTFKQPVFTVSKDSVLA 292
Query: 487 SFNMQFYGSPGISSYSTPFITQRSPALSLGLTADQTK-MAVGYGDSSIKVYDMETQE 654
N + G P + + P + PA++ G T + K VG S+ V T++
Sbjct: 293 GTNKENLGLPVSTPFLEPPLGSDGPAVTFGKTQEDPKPFCVGSAPPSVDVTPTYTKD 349
>BC114220-1|AAI14221.1| 1703|Homo sapiens BCOR protein protein.
Length = 1703
Score = 32.7 bits (71), Expect = 1.5
Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 1/117 (0%)
Frame = +1
Query: 307 YSAMYIEKCAVSAQASVRH*IQHGRRKSLLRCLYGRCNLQDRNTQQEPPLFCIRADPALE 486
++A + + A + SV +Q R LR GR + + P+F + D L
Sbjct: 826 FAAESVGQSAEPPKPSVEPALQQHRDFIALREELGRISDFHETYTFKQPVFTVSKDSVLA 885
Query: 487 SFNMQFYGSPGISSYSTPFITQRSPALSLGLTADQTK-MAVGYGDSSIKVYDMETQE 654
N + G P + + P + PA++ G T + K VG S+ V T++
Sbjct: 886 GTNKENLGLPVSTPFLEPPLGSDGPAVTFGKTQEDPKPFCVGSAPPSVDVTPTYTKD 942
>AY316592-1|AAR08265.1| 1755|Homo sapiens BCL-6 corepressor long
isoform protein.
Length = 1755
Score = 32.7 bits (71), Expect = 1.5
Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 1/117 (0%)
Frame = +1
Query: 307 YSAMYIEKCAVSAQASVRH*IQHGRRKSLLRCLYGRCNLQDRNTQQEPPLFCIRADPALE 486
++A + + A + SV +Q R LR GR + + P+F + D L
Sbjct: 826 FAAESVGQSAEPPKPSVEPALQQHRDFIALREELGRISDFHETYTFKQPVFTVSKDSVLA 885
Query: 487 SFNMQFYGSPGISSYSTPFITQRSPALSLGLTADQTK-MAVGYGDSSIKVYDMETQE 654
N + G P + + P + PA++ G T + K VG S+ V T++
Sbjct: 886 GTNKENLGLPVSTPFLEPPLGSDGPAVTFGKTQEDPKPFCVGSAPPSVDVTPTYTKD 942
>AK074286-1|BAB85037.1| 1139|Homo sapiens protein ( Homo sapiens
cDNA FLJ23706 fis, clone HEP11450, highly similar to
Homo sapiens BCL-6 corepressor (BCOR) mRNA. ).
Length = 1139
Score = 32.7 bits (71), Expect = 1.5
Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 1/117 (0%)
Frame = +1
Query: 307 YSAMYIEKCAVSAQASVRH*IQHGRRKSLLRCLYGRCNLQDRNTQQEPPLFCIRADPALE 486
++A + + A + SV +Q R LR GR + + P+F + D L
Sbjct: 610 FAAESVGQSAEPPKPSVEPALQQHRDFIALREELGRISDFHETYTFKQPVFTVSKDSVLA 669
Query: 487 SFNMQFYGSPGISSYSTPFITQRSPALSLGLTADQTK-MAVGYGDSSIKVYDMETQE 654
N + G P + + P + PA++ G T + K VG S+ V T++
Sbjct: 670 GTNKENLGLPVSTPFLEPPLGSDGPAVTFGKTQEDPKPFCVGSAPPSVDVTPTYTKD 726
>AF317392-1|AAG41430.1| 1004|Homo sapiens BCL-6 corepressor short
isoform protein.
Length = 1004
Score = 32.7 bits (71), Expect = 1.5
Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 1/117 (0%)
Frame = +1
Query: 307 YSAMYIEKCAVSAQASVRH*IQHGRRKSLLRCLYGRCNLQDRNTQQEPPLFCIRADPALE 486
++A + + A + SV +Q R LR GR + + P+F + D L
Sbjct: 826 FAAESVGQSAEPPKPSVEPALQQHRDFIALREELGRISDFHETYTFKQPVFTVSKDSVLA 885
Query: 487 SFNMQFYGSPGISSYSTPFITQRSPALSLGLTADQTK-MAVGYGDSSIKVYDMETQE 654
N + G P + + P + PA++ G T + K VG S+ V T++
Sbjct: 886 GTNKENLGLPVSTPFLEPPLGSDGPAVTFGKTQEDPKPFCVGSAPPSVDVTPTYTKD 942
>AF317391-1|AAG41429.1| 1721|Homo sapiens BCL-6 corepressor protein.
Length = 1721
Score = 32.7 bits (71), Expect = 1.5
Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 1/117 (0%)
Frame = +1
Query: 307 YSAMYIEKCAVSAQASVRH*IQHGRRKSLLRCLYGRCNLQDRNTQQEPPLFCIRADPALE 486
++A + + A + SV +Q R LR GR + + P+F + D L
Sbjct: 826 FAAESVGQSAEPPKPSVEPALQQHRDFIALREELGRISDFHETYTFKQPVFTVSKDSVLA 885
Query: 487 SFNMQFYGSPGISSYSTPFITQRSPALSLGLTADQTK-MAVGYGDSSIKVYDMETQE 654
N + G P + + P + PA++ G T + K VG S+ V T++
Sbjct: 886 GTNKENLGLPVSTPFLEPPLGSDGPAVTFGKTQEDPKPFCVGSAPPSVDVTPTYTKD 942
>AB046795-1|BAB13401.2| 1010|Homo sapiens KIAA1575 protein protein.
Length = 1010
Score = 32.7 bits (71), Expect = 1.5
Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 1/117 (0%)
Frame = +1
Query: 307 YSAMYIEKCAVSAQASVRH*IQHGRRKSLLRCLYGRCNLQDRNTQQEPPLFCIRADPALE 486
++A + + A + SV +Q R LR GR + + P+F + D L
Sbjct: 832 FAAESVGQSAEPPKPSVEPALQQHRDFIALREELGRISDFHETYTFKQPVFTVSKDSVLA 891
Query: 487 SFNMQFYGSPGISSYSTPFITQRSPALSLGLTADQTK-MAVGYGDSSIKVYDMETQE 654
N + G P + + P + PA++ G T + K VG S+ V T++
Sbjct: 892 GTNKENLGLPVSTPFLEPPLGSDGPAVTFGKTQEDPKPFCVGSAPPSVDVTPTYTKD 948
>U86136-1|AAC51107.1| 2627|Homo sapiens telomerase-associated protein
TP-1 protein.
Length = 2627
Score = 31.5 bits (68), Expect = 3.4
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +1
Query: 556 SPALSLGLTADQTKMAVGYGDSSIKVYDMET 648
SPALS+ L+ D ++AVGY I++Y + +
Sbjct: 1928 SPALSVALSPDGDRVAVGYRADGIRIYKISS 1958
>BC126107-1|AAI26108.1| 2627|Homo sapiens telomerase-associated
protein 1 protein.
Length = 2627
Score = 31.5 bits (68), Expect = 3.4
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +1
Query: 556 SPALSLGLTADQTKMAVGYGDSSIKVYDMET 648
SPALS+ L+ D ++AVGY I++Y + +
Sbjct: 1928 SPALSVALSPDGDRVAVGYRADGIRIYKISS 1958
>AB209669-1|BAD92906.1| 1903|Homo sapiens Telomerase protein component
1 variant protein.
Length = 1903
Score = 31.5 bits (68), Expect = 3.4
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +1
Query: 556 SPALSLGLTADQTKMAVGYGDSSIKVYDMET 648
SPALS+ L+ D ++AVGY I++Y + +
Sbjct: 1270 SPALSVALSPDGDRVAVGYRADGIRIYKISS 1300
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,950,240
Number of Sequences: 237096
Number of extensions: 2262706
Number of successful extensions: 4378
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4378
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9071127468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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